Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03298 ATGCAAAGCTTCAAAACAGCTCAATCAAACTCTCAACTCTATTGCCACCAACCCTTCTTGCTTCGGGGAGAAGATATAAACAGAAACCAAATGCGTTTTTCTGATCTTGGAGATTTTCAACATTCTTCTCCTTTCTTTCAACAACAAGATGCTGTTGATTTAAGTTCAAGTTGTATGTTTAGTAATGTAAAGTCGAACAATGTTGTTATTGGTGGTAGTAACATGCAGTATGGGACAACAATCAACACGAATGTTGGGTCTGCAGAGATAGCTTCAAATGGCGTAGGGTGTTCGGATGCAGGGCAGCAGCAACTGATGTACAACAAGGGAATAGCCTCCTTGCCTTTGGGGAATTGTCATGTTGAGAATTGGGCTGATTCTGGAATGGCAGATAATAGCCAACAGACTGATGATACATCCACTGACATCGATACTGATGATAAAAATCAATCCAATAGAAGAAAGAGTGGAACACATATGGTTGCTCACTCCAAGGATCAAACCAATTTCAGAGCTGAAGATCAAAAGACCCTTCGTAGACTTGCTCAGAATCGTGAGGCGGCAAGGAAGAGCCGGTTACGGAAGAAGGCATATGTACAGCAGCTGGAGAGCAGCCGAGTGAAGCTTATGCAATTAGAGCAAGAGCTTCAACGAGCACGTCAACAGGGCATGTTTCATGCAAATTCTGGAGATCAAGGTCATTCAGCTGTTGGAAATGGTGCCTTAGCATTCGACATGGACTATGCTCACTGGGTTGATGAGCATCAACGTCTTCTCAACGATCTAAGATCCGCGTTAAATTCTCAAATGGGTGATAATGAATTGCATCTTCTTGTTGATGGTGTTATGGCACATTATAATGAATTATTTAGGTTAAAGAGCATAGGGGCAAAGGCGGATATATTTCACATGCTTTATGGACAGTGGAAGACACCGGTAGAAAGATTTTTTATTTGGCATGGTGCTTTCCGTTCATCCGAACTTCTCAAGATAGTCAGGAACCACCTCGAGCCATTAACCGAAAATCAGTTGATGGGAATTTGTACTCTGCAGAAGTCTACTCAGCAAACTGAGGATGCTTTATCTCAAGGGATGGAAGTATTGAAACAAAAACTTTTAGAGATACTTTCCTCTACTTCCTCATTGCCTAGTACTGGTTCTGGAAATGTAGCTGATTACATGGGCCAAATGGCATTTGCTATGAGCAAGCTTGCATCAATAGAGGAATTCCTTCGTCAGGCTGACCTCCTGAAGCAAGAAACTCTGCAACAGTTACAAAGGATTTTGACGACACGTCAGATTGCTCGGGCACTCCTTGTCAGAAATGATTACATTTCAAGACTACGAGCACTTAGCTCGTTATGGTTAGCACGACCAAGGGATTAG 1386 0.4235 MQSFKTAQSNSQLYCHQPFLLRGEDINRNQMRFSDLGDFQHSSPFFQQQDAVDLSSSCMFSNVKSNNVVIGGSNMQYGTTINTNVGSAEIASNGVGCSDAGQQQLMYNKGIASLPLGNCHVENWADSGMADNSQQTDDTSTDIDTDDKNQSNRRKSGTHMVAHSKDQTNFRAEDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRVKLMQLEQELQRARQQGMFHANSGDQGHSAVGNGALAFDMDYAHWVDEHQRLLNDLRSALNSQMGDNELHLLVDGVMAHYNELFRLKSIGAKADIFHMLYGQWKTPVERFFIWHGAFRSSELLKIVRNHLEPLTENQLMGICTLQKSTQQTEDALSQGMEVLKQKLLEILSSTSSLPSTGSGNVADYMGQMAFAMSKLASIEEFLRQADLLKQETLQQLQRILTTRQIARALLVRNDYISRLRALSSLWLARPRD 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03298 461 Pfam bZIP transcription factor 175 211 IPR004827 GO:0003700|GO:0006355
Trre9g03298 461 ProSiteProfiles DOG1 domain profile. 241 458 IPR025422 GO:0006351|GO:0043565
Trre9g03298 461 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 174 218 IPR004827 GO:0003700|GO:0006355
Trre9g03298 461 SMART brlzneu 172 236 IPR004827 GO:0003700|GO:0006355
Trre9g03298 461 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 179 194 IPR004827 GO:0003700|GO:0006355
Trre9g03298 461 Coils Coil 195 222 - -
Trre9g03298 461 PANTHER TRANSCRIPTION FACTOR TGA9 122 460 - -
Trre9g03298 461 SUPERFAMILY Leucine zipper domain 176 219 IPR046347 GO:0003700|GO:0006355
Trre9g03298 461 Gene3D - 175 224 - -
Trre9g03298 461 CDD bZIP_HBP1b-like 176 225 - -
Trre9g03298 461 FunFam BZIP family transcription factor 175 224 - -
Trre9g03298 461 MobiDBLite consensus disorder prediction 125 167 - -
Trre9g03298 461 Pfam Seed dormancy control 259 333 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03298 Trre-Chr9 41622031 41625987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03298 3 461 bZIP Transcription Factor Family AT1G68640 54.123 4.97e-152 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre9g03298 DOG1 8.2e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03298 9 41622031 41625987 Trre9g03298 9 41622031 41625987 ECH