Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g02728 ATGAAGCTTTTTGGGAGAACCATTTTTCTAACACACAACCACATGGATGTCTCTTCCAATGATTCTTCCTCAGAATTTGCAACTCATATTCCTTATGAAGATTTATCTGATCATAGTCTTCATTCATCTTTATCTTCACCTTCTCCACTTGAAGTGAATTCTCAAACTCAATATGATGCTAAGAGATATAAGGAAACATCAATGAAACAATTCACCTCAGTGCAAGTTGATGATGAGGTCTCACAACAAACCAAAGAGGATTTAAAATCTCCAACATCTTCAAGCCTTATTGAGAACCCGAAAACACCCTCATCAGAAACCGAAACTTCTCAACTCGATTCCACTAAAATTGATGAACAAAGTGATATGTCACAAGACAAATCTCCAAAGAAACCAGACCAAATTGTTCCATGTCCAAGATGCAAAAACATGGACACAAAATTTTGTTACTACAACAACTACAACGTCAAACAGCCGCGACATTTCTGCAAAAACTGCCAAAGATATTGGACTGCTGGAGGAACCACGAGAAACATGCTTGTAGGCGCAGGTCGGCGCAAGAACAAATTATCTTCTTCATTTTCTTCCGATGTCTCACATTCTCGTCAAATGAATACTGTCTTGACCTTTGGATCAGATTCTTCAACTTCACTTGACAAGAAAATGAATGTTGACTCACATGAAGAAAAAACTGATAAAAGTTATCAAAATTTTCCTCCACAGTTTCCATGGAACCCTGCAATGTCTTATCCTGTGACATTCTATCCCAATATAGCATATTATGGTGGTTGTTTGGTACCATCTTGGAGTGTACAACCTATCTCACCACAATCTTGTGATCCAACTTTAGGGAAACATTCTAGAGATGGAAAGATTTTCTCTCATTCGAACTCGGAGAAAGAAAAACTTTGCTCAGAAAATAACAAGATAGAAAGTAATAATACTAGTGAGTTGATCCCTAAGACATTGAGAAGAAAACTTTTCAAGGGATTTGCATCTAAGGGTGTTGAGAATAATCAAGTGGTTGAAGTATCATCATCAGTAATGAAAGCTAACCCTGCAGCTTTATCAAGGTCTCTTGTGTTCCATGAGAGAATTTGA 1101 0.3724 MKLFGRTIFLTHNHMDVSSNDSSSEFATHIPYEDLSDHSLHSSLSSPSPLEVNSQTQYDAKRYKETSMKQFTSVQVDDEVSQQTKEDLKSPTSSSLIENPKTPSSETETSQLDSTKIDEQSDMSQDKSPKKPDQIVPCPRCKNMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTTRNMLVGAGRRKNKLSSSFSSDVSHSRQMNTVLTFGSDSSTSLDKKMNVDSHEEKTDKSYQNFPPQFPWNPAMSYPVTFYPNIAYYGGCLVPSWSVQPISPQSCDPTLGKHSRDGKIFSHSNSEKEKLCSENNKIESNNTSELIPKTLRRKLFKGFASKGVENNQVVEVSSSVMKANPAALSRSLVFHERI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g02728 366 MobiDBLite consensus disorder prediction 112 129 - -
Trre9g02728 366 PANTHER CYCLIC DOF FACTOR 2 1 365 IPR045174 GO:0003700|GO:0006355
Trre9g02728 366 MobiDBLite consensus disorder prediction 71 137 - -
Trre9g02728 366 MobiDBLite consensus disorder prediction 86 111 - -
Trre9g02728 366 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
Trre9g02728 366 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Trre9g02728 366 Pfam Dof domain, zinc finger 133 189 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g02728 Trre-Chr9 34414192 34416086 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g02728 74 366 C2C2-Dof Transcription Factor Family AT1G69570 35.735 2.27e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre9g02728 zf-Dof 2.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g02728 - - psat:127119499 492.271