Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g05682 ATGGGTGAAGGTGAAAGTAGTGATATCACTCCTAAAAACGCACCATTGGATTCTGTTACAAATTCTACCTCGAAGAAGCTTGCTAGGCAGCTCGATTTCAACGCTTTTGGTGGTGCGCCGGTAACTGCACCTTTGCCGGAACAGCCGCAACCACCTCCGGCACTGCCTCCTCTTCCTGCAGCCAAATTGGGGAAACCAGAATCTCCAAAATCAAAATCAAGATCTAACTTTGAAACAAAAGATGCTACTCCAAAGAAGCAAAAGCAGTGCAACTGTAAACATTCAAAATGCTTAAAGCTGTATTGTGAATGTTTTGCGTCAGGAATATATTGTGATGGTTGCAATTGTGTAAACTGTTTTAACAATGTTGATAATGAAGCGGCTAGACGAGAAGCTGTTGAAGCAACTTTAGAACGCAATCCAAATGCATTTAGGCCTAAAATAGCGAGTAGTCCTCATGGAACACGTGATAGCAGGGAGGAGGCTGGGGAAGTTCTAATATTGGGAAAGCACAATAAAGGGTGCCATTGTAAAAAATCCGGGTGCCTCAAGAAGTACTGTGAATGTTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAAGGAAGTGAAGAGCGACAGGCTCTGTTCCATGGAGATCAAAACAACAATATGGCATATATTCAGCAGGCAGCCAATGCTGCCATCACTGGAGCTATTGGTTCCTCTGGTTATTCATCACCACCAGTATCGAGAAAAAGAAAAGGTTCAGAACTCTGGCCGTCCATCAAGGATCCATCTGTTAGCAAGCTGGGACAACAGGCAAATCCTATCAGAGGTCCTGCAGCACCCTCCTCATCCATGTCTCCTGTTCCAGTTTCTCGTGTTGGACCTGCAACAGTAGGCCCTTCGAAATTTATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAGCTTTGCTCTGTTCTTGTACTAGTATCTGGACAAGCGACTAAAACACTTACAGACCAGAAAAATTTAAAGGATAAGCACACAGAAGATCAGACAGAAACTTCTCTTGCTTCTTCAAATCAAGAGCAATTACCAAATCAAAAGGAAGCTGATGTTGAGAAAGCTATGGCTGATGATTGTTCGAGTGCAAACCAAACTGATAAAACCAGTCCTGAAAATTCCAGTTCAGATGGTGCTGATGTTCCAAAGGGGAGGCCAATGTCTCCTGGAACTTTAGCATTGATGTGTGATGAGAAAGATACAATGTTCATGACAGCTGCCCCCTCTATTGGATCAATGGCCCATGCTTGCAACACATCTTCACAATTGCCTTATGGACAAGGAGCGACAGAGATCTATGCAGAGCAAGAAAGGATAGTATTGACGAAATTCAGAGATTTTCTTAATAGGGTTATCACTATGGGAGAAATAAATGAAACAAAGTGTTCTTCATTAGCAAGAAATGAGTTAGAGATTCAAAAGGACCCGATCATCAATAGCACTGAAAATGCCGGTACTGATGTGGCACATCAACAGGGACTGGGAGCCACCAGTAATGGTGTTGCCAATGTTGTTGGCAACACCACCACTTCAACATCTTTGGCCCCTAGTAGTCTTGTTTCGGAAAATGGGGAAATTAAGCCGAAGGTCGAACAATAG 1668 0.4299 MGEGESSDITPKNAPLDSVTNSTSKKLARQLDFNAFGGAPVTAPLPEQPQPPPALPPLPAAKLGKPESPKSKSRSNFETKDATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPHGTRDSREEAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMAYIQQAANAAITGAIGSSGYSSPPVSRKRKGSELWPSIKDPSVSKLGQQANPIRGPAAPSSSMSPVPVSRVGPATVGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQATKTLTDQKNLKDKHTEDQTETSLASSNQEQLPNQKEADVEKAMADDCSSANQTDKTSPENSSSDGADVPKGRPMSPGTLALMCDEKDTMFMTAAPSIGSMAHACNTSSQLPYGQGATEIYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARNELEIQKDPIINSTENAGTDVAHQQGLGATSNGVANVVGNTTTSTSLAPSSLVSENGEIKPKVEQ 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g05682 555 SMART CXC_2 85 125 IPR033467 -
Trre8g05682 555 SMART CXC_2 170 211 IPR033467 -
Trre8g05682 555 MobiDBLite consensus disorder prediction 268 294 - -
Trre8g05682 555 MobiDBLite consensus disorder prediction 244 297 - -
Trre8g05682 555 MobiDBLite consensus disorder prediction 382 400 - -
Trre8g05682 555 ProSiteProfiles CRC domain profile. 86 210 IPR005172 -
Trre8g05682 555 PANTHER TESMIN/TSO1-RELATED 59 480 IPR028307 -
Trre8g05682 555 MobiDBLite consensus disorder prediction 535 555 - -
Trre8g05682 555 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 87 122 IPR005172 -
Trre8g05682 555 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 173 207 IPR005172 -
Trre8g05682 555 MobiDBLite consensus disorder prediction 37 80 - -
Trre8g05682 555 MobiDBLite consensus disorder prediction 44 63 - -
Trre8g05682 555 MobiDBLite consensus disorder prediction 343 414 - -
Trre8g05682 555 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g05682 Trre-Chr8 58043697 58048519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g05682 66 494 CPP Transcription Factor Family AT4G29000 65.438 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre8g05682 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g05682 - - psat:127100492 947.192