Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04978 ATGGTGAAAATCACTGAAGAAATTGAACTCTTTGATCAACAAGAAGAGGAACAAGAAGTTATAGACTATGATGAGCTGAAGAAACGTATGTGGAAGGACAGAATCCTGCTACAAAAGCTCAAGGAGAAAGGTAAAAAAGATGATCAACAAAATCAACAATCAAAAGATGAGGCATCAAGAAGAAAAAAGATGTCAAGAGCACAAGATTCAATTCTTAAATACATGATGAAGATTATGACAACATGTAAAGCTCAAGGTTTTGTCTATGGTATTATACCAGAAAAAGGAAAACCAGTAACAGGTTCTTCTGAAAGCTTGCGTGAATGGTGGAAACAACAAGTCAAATTCAGTCAAAATGCTCCATTACAAGTTTCTAAATATTTACCACTTTTTGAAAAAAATGAACAAGAGTTGGAATTATTAGATCCAATTTCATCATATATGTATTTACTTTATGATTTGCAAGATACTACTTTAGGTTCTCTACTTTCAGCTCTAATGCAACACTGTGCACCGCCGCAACGAAGATTCCCTCTTGAAAGAGGTTTAGCTCCACCTTGGTGGCCTAATGGAACAGAACAATGGTGGGGTCAACAAGGTCTTTTGGCACAAAAACAAGGTCCACCACCTTATAAAAAACCTCATGATTTGAAAAAGGCTTGGAAAGTTTCTGTGTTGGCTGCAATCATTAAGCACTTGTCTCCTGATGTTGATAAAGTTAGAAGGTTGGTGACTCAATCAAAGACTTTGCAAGATAAGATGACAGCTAAAGATAGTGCAACTTGGTCCAAAGTTATGAACCAAGAACAAGCTTTGGTTCATCTCACTGAAAAGTGCCTCAAGATATCAGAAGAAGGTGAAAGTTCTAGTACTAGTAAACATGTTTTGAATCAGTTGGAAGAATGTGGTAGCAATGAGAAGAGGAAGTTTGATTTTGATGTTGATGTTGATGTTGATTTTGATAAGCTACTATATTCATGTCAATATGCTGAGTGCCCACAAAGTGAATTGTGTATGGGATTTTCAGACAAAAACTCAAGAGTGAACCATGAATCACTCTGTTCTTACAGAACAGAACAAGGACATCCCTTCCATGATTATCCCTACCATGAAGAATATGTTAATAATCAGAATCAGGATCATAATAACCTCGTTGAGAATGTGAATGAACTGAGAGAGATTGTTGATAGGACAGTAGAGGAAGGTTATGGTGGCTTCTGGCTAAATAGCATGCAAGATCTTGAATTGCACACGGAAGTTGACATGGAAAGCGATAACATGGACTTGAATCAAAATCCAGCACAAGAGACAACATTGAGTCATGAAGAAACTTCAATATGGGACTTGACATACAACTAA 1359 0.3664 MVKITEEIELFDQQEEEQEVIDYDELKKRMWKDRILLQKLKEKGKKDDQQNQQSKDEASRRKKMSRAQDSILKYMMKIMTTCKAQGFVYGIIPEKGKPVTGSSESLREWWKQQVKFSQNAPLQVSKYLPLFEKNEQELELLDPISSYMYLLYDLQDTTLGSLLSALMQHCAPPQRRFPLERGLAPPWWPNGTEQWWGQQGLLAQKQGPPPYKKPHDLKKAWKVSVLAAIIKHLSPDVDKVRRLVTQSKTLQDKMTAKDSATWSKVMNQEQALVHLTEKCLKISEEGESSSTSKHVLNQLEECGSNEKRKFDFDVDVDVDFDKLLYSCQYAECPQSELCMGFSDKNSRVNHESLCSYRTEQGHPFHDYPYHEEYVNNQNQDHNNLVENVNELREIVDRTVEEGYGGFWLNSMQDLELHTEVDMESDNMDLNQNPAQETTLSHEETSIWDLTYN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04978 452 Coils Coil 374 401 - -
Trre8g04978 452 SUPERFAMILY DNA-binding domain of EIN3-like 148 273 IPR023278 GO:0003700|GO:0005634
Trre8g04978 452 MobiDBLite consensus disorder prediction 42 66 - -
Trre8g04978 452 Coils Coil 37 57 - -
Trre8g04978 452 Pfam Ethylene insensitive 3 24 269 IPR047091 GO:0003700
Trre8g04978 452 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 7 429 IPR006957 GO:0003700|GO:0005634
Trre8g04978 452 FunFam Ethylene insensitive 3-like 1 143 279 - -
Trre8g04978 452 Gene3D - 53 135 IPR023278 GO:0003700|GO:0005634
Trre8g04978 452 Gene3D - 142 279 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04978 Trre-Chr8 52732221 52733579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04978 1 449 EIL Transcription Factor Family AT5G10120 46.122 1.15e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF EIL Trre8g04978 EIN3 7.3e-110 No_clan