Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04213 ATGAGTGAAGGAAACAAGATGTTTCCTATTTTGTTAATCACCATTGCAGTAGTAGTATCAATAACACAAGCACAACCAGAAGCAAATTTCCAGTGCAAAACACAAGACGCCACGTGTCGTAGTATAACAGAATACACAAACCCAAACACAACAACCTTAGAACAAATCCAAACCCTCTTCGGCATAAAACACTACCTCGATTTCCTCGGAGTTAACAATCTTCCAACAAACACAAAAAACAGTTACAAACTAACTCCCAACAGAGTCATCAAAGTTCCATTTCAATGTAAATGTGATAACGGAACAGGAAAATCGAACCATGTTCCACAGTACAAAATAAAACCGGGTGACACGTTGGATGTTATAGCAAGAACCCGGTTCGCTAGTTTGGTTAAATATCAACAGATCCAAACCGCTAATAAGATTGTTGATGCTGATAATATAACTGCTGGTGATACACTTTGGATTCCTTTGCCTTGTAGTTGTGATAAGGTGGATGGGAACAGTGTGATGCATTATGCACATATTGTTCAATCTGGAAGTAGTATTGAATCTATTGCTCAACAATTTGGTGCTACTCAACAGAGTTTACAAACAATTAATGGTATTAAAGATCCTAAATCACTTGAAGCTGGTCAGATTCTTGATGTTCCTCTTCCAGTTTGCAACTCTAGTGTGAAAAGTGATTCATTGGATTTTCCACTGCTTGTACCAAATGGGACTTATTTCTACACTGCAAATGAATGTGTCAAATGTAAATGCGATTCTACCAACAATTTTCTGTTACAATGTGACCCATCAAACCAAAAACCGATAAATAAGTGGTCTGTCTGTCCATCTACGAGATGTTCTGGGAGTGTGTTGATTGGGAACACTACATCGACAGATTCGTGTAGTCGTACAGTTTGTGATTACACTGGTTATACTTCTAGCAATATCTCTACTGCTCTTGTTACCCAAAACACTTGTGCTGCTGTGGCACCGGACGGCGGTGGCGGCAATTCAGGTTCGGGGGCATCCAGGAGCATATTGAATAAGCTTCTTGTTCTCATTCAATTCCTCCTCTTTTTTGTTTATCTTTTGTAG 1086 0.3913 MSEGNKMFPILLITIAVVVSITQAQPEANFQCKTQDATCRSITEYTNPNTTTLEQIQTLFGIKHYLDFLGVNNLPTNTKNSYKLTPNRVIKVPFQCKCDNGTGKSNHVPQYKIKPGDTLDVIARTRFASLVKYQQIQTANKIVDADNITAGDTLWIPLPCSCDKVDGNSVMHYAHIVQSGSSIESIAQQFGATQQSLQTINGIKDPKSLEAGQILDVPLPVCNSSVKSDSLDFPLLVPNGTYFYTANECVKCKCDSTNNFLLQCDPSNQKPINKWSVCPSTRCSGSVLIGNTTSTDSCSRTVCDYTGYTSSNISTALVTQNTCAAVAPDGGGGNSGSGASRSILNKLLVLIQFLLFFVYLL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04213 361 CDD LysM 111 156 IPR018392 -
Trre8g04213 361 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 11 324 - -
Trre8g04213 361 SUPERFAMILY LysM domain 173 219 IPR036779 -
Trre8g04213 361 Gene3D LysM domain 108 166 IPR036779 -
Trre8g04213 361 Gene3D LysM domain 172 229 IPR036779 -
Trre8g04213 361 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Trre8g04213 361 Pfam LysM domain 175 218 IPR018392 -
Trre8g04213 361 Pfam LysM domain 111 157 IPR018392 -
Trre8g04213 361 ProSiteProfiles LysM domain profile. 173 217 IPR018392 -
Trre8g04213 361 SMART LysM_2 174 218 IPR018392 -
Trre8g04213 361 SMART LysM_2 110 157 IPR018392 -
Trre8g04213 361 CDD LysM 175 217 IPR018392 -
Trre8g04213 361 SUPERFAMILY LysM domain 110 158 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04213 Trre-Chr8 46719497 46721846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04213 11 352 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 42.151 4.12e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04213 - - cam:101506878 483.796