Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03619 ATGGGTTTGAGTTCAAAACAGGTTATTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAATCACAAGATTTAGAACTTCCAAAACCTCATCATCTAATGAGAAAACAACAACAGCAGCAACAACAACAAACTCAACAGCAATCAGAACATTTGAATTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTATAACAATTACAACAAGTCTCAACCTCGTCATTTCTGTAGAGCTTGTAAAAGACACTGGACTAAAGGCGGAACGCTACGCAATGTTCCGGTTGGTGGTGGAAGAAAGAATAAGAGAAGCAAAAAATCAACCATACCAGTTACTTCTTCAACCACCACAGCAACTACTACTTGCACCACCTCAATTGTTGCTAATATGAATGGTGGTTTGAATAGCAACATGACAATTCAAAACCCTCTTGGAATTAGTGATCAAAAAACCATTCCTTCATCTCTATATCAAGCTCTAATTCATCCACCATCTTTGCTTCTACATCAGAATATGATGAATACAAGAGGCTTATCAGAAAGCAAAGATTTCGGTATTGGAAATGGTCATCATGGTAATGGAATTTTTACTAGTACTAGTTCAACTTTGAATCTTCCTCATCAAAATCAAAGCATGATCTTTCCCTTTTCAACTTCAAACTCATTTGACACAACTACTTGTTCATCTTCTAATGTTTATTACTATGGAGAAGAGTTTAAAACAATGGAGGAACCAATAATTCCAAGCACTACTGGTTGCACTAACACAAAGCCATGGGAGATACCTTCCGCCGCCGCCGCAGCAGCAGCAGCAGCAACAACTGGTGGAATGGAAGCTTCAAAGTATTGGAATTGGGAAGACATTGATTCATTGGTATCAACTGATCTAAAGAATCCTTATTGGGATGATTCAGATATCAAACCTTGA 936 0.3761 MGLSSKQVISSSGLDWKQTLLESQDLELPKPHHLMRKQQQQQQQQTQQQSEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRSKKSTIPVTSSTTTATTTCTTSIVANMNGGLNSNMTIQNPLGISDQKTIPSSLYQALIHPPSLLLHQNMMNTRGLSESKDFGIGNGHHGNGIFTSTSSTLNLPHQNQSMIFPFSTSNSFDTTTCSSSNVYYYGEEFKTMEEPIIPSTTGCTNTKPWEIPSAAAAAAAAATTGGMEASKYWNWEDIDSLVSTDLKNPYWDDSDIKP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03619 311 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Trre8g03619 311 MobiDBLite consensus disorder prediction 94 118 - -
Trre8g03619 311 MobiDBLite consensus disorder prediction 33 54 - -
Trre8g03619 311 MobiDBLite consensus disorder prediction 35 54 - -
Trre8g03619 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 210 IPR045174 GO:0003700|GO:0006355
Trre8g03619 311 Pfam Dof domain, zinc finger 52 106 IPR003851 GO:0003677|GO:0006355
Trre8g03619 311 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03619 Trre-Chr8 40747152 40748087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03619 37 124 C2C2-Dof Transcription Factor Family AT5G60850 59.551 6.93e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre8g03619 zf-Dof 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03619 - - mtr:25493206 477.248