Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03525 ATGTTTGGTGGTAACTGTGTTCATGAGAAAACGGTAATCACTTCTAACAAATTGACACAGAGTACTGATATATATGATCATCATACTAAAATTTCAATGGCTTCTTCAAGTGATGTTAATAATAATAATAATAGGGTTATGGAAAAACCAGGACAAGAACTTGTTCAACAACAACAACAAGCTTTAAGATGTCCACGTTGTGATTCATCAAACACTAAATTCTGTTATTACAATAACTACAGTTTATCACAACCAAGACACTTTTGCAAAGCTTGTAAAAGATATTGGACAAGAGGTGGAACTCTTAGAAATGTTCCTGTTGGTGGTGGTTGCAGAAAAAACAAACGTGTTAAGAGACCAAATCATTCTTCTTCCAACAACAATAACATTCATTCTCCTTCTTCTTCAACTCCTACTAGTGTTAATGCTAATTCAAACCCTTCTTCTCATCAACAACAACAACAACATCATAGTTTTGATGTTGCTTCTACTTCAAACCATATCAATACTCTTCTTTATGGTAACTCCTGTCATGATGTTATGAATTTTCCTTTTTCAACAAGGTTTAACTCTACTAGAGTTTCAAGTTCTGGTTCTGGTTATGATCATCTTCAGCAAAATGGTCTTGGATTAGGTTTTTCATCTGGTTTAACTAATCTTAATCATCATCATGATGATTATAGAAATGGGTTTAGTACTTCTTCAAATAATAATAATTATAGTTCCATCTTTGGTTCTTCTTCCATGAGTTCTACTACTCCAGTTATGAATTCTCTACTTAGCTCTACACTACTGCAACAGAAATTCATGAGTACTATTGGTGGTGCCGGCGGCGGTGGCGGTATGAAAAGTGATCTTTTTCATCATCAAGATATGAAAATGGAAGGAAATAGTAGAAGTGAGGTTGAGATGATGGCTTCAAAAGAAGGACTTAATAGGTTGGATCAGTGGAACAACAATAATCACATGAATGGTAGTAATGGTACTGTTGCTTTTCAAAACCAGATGGAGAATATGGGTTTATCAGATTCAGGTTATTGGAACAATAGTAACAACAACAACAACATAGCAACAACAGGTTTGGGTAGTAGTGTTTGGAGTACTGATCAACCTAATACTATTGGTCCTAATTCAGTTACTTCTCTGATCTAG 1152 0.3455 MFGGNCVHEKTVITSNKLTQSTDIYDHHTKISMASSSDVNNNNNRVMEKPGQELVQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNHSSSNNNNIHSPSSSTPTSVNANSNPSSHQQQQQHHSFDVASTSNHINTLLYGNSCHDVMNFPFSTRFNSTRVSSSGSGYDHLQQNGLGLGFSSGLTNLNHHHDDYRNGFSTSSNNNNYSSIFGSSSMSSTTPVMNSLLSSTLLQQKFMSTIGGAGGGGGMKSDLFHHQDMKMEGNSRSEVEMMASKEGLNRLDQWNNNNHMNGSNGTVAFQNQMENMGLSDSGYWNNSNNNNNIATTGLGSSVWSTDQPNTIGPNSVTSLI 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03525 383 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 48 261 IPR045174 GO:0003700|GO:0006355
Trre8g03525 383 Pfam Dof domain, zinc finger 60 116 IPR003851 GO:0003677|GO:0006355
Trre8g03525 383 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Trre8g03525 383 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Trre8g03525 383 MobiDBLite consensus disorder prediction 121 160 - -
Trre8g03525 383 MobiDBLite consensus disorder prediction 106 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03525 Trre-Chr8 39366217 39367576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03525 48 123 C2C2-Dof Transcription Factor Family AT5G65590 72.368 2.06e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre8g03525 zf-Dof 4.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03525 - - psat:127105320 380.948