Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03248 ATGGTTTTCTCTTCTATTCAAGGCTATGTAGATCCACCTAATTGGCACCACCAGCAACCAAATCATCATCAACAAAATGGAAATGATAACACTCAACTGCTTCCACCCTTACCACCTCAAGTGGGTGGCAATATCGGTTCTGGTGGTGGTACTATGGGCTCGATCAGACCAAACTCCATGGCTGATCAAGCTCGTAGAGCAAAAATACTACCACCAGAACCAGCACTGAAGTGTCCACGATGTGATTCAACCAACACTAAATTTTGCTACTACAACAACTATAGCCTCACTCAACCTCGTCACTTCTGCAAAGCTTGTAGGCGTTATTGGACAAAAGGAGGTGCACTTAGAAATGTTCCTGTTGGTGGAGGGTGTCGTAGAAACAACAAGAAGAACAAAAGAAGCCGTTCGAAATCTCCTAATTCAACAAACTCTCATGAAAAACAAACTTCATCATCAAGTGCAATCCCTTCTCATCATGAACTAATAAGTCATCAGTTACCACAAACAATTACCAACCTACCCTTCATGGCGTCGATGCAGAATCATCTGAGTCGTTATGTTGTTGGTAACGTTAACATGGGTCTCGGTTTACGCGAGATCCAACAACAACAGCAACAAACAGATCATATGGGGTTTCAAATTGGTGTTGGTAATGGTACCTCATCAGTTTCTGTTTCTGGTGGTGTTGCCGGAGGAGGCGTTGGAGTTGATCAGTGGCGTAATTTACAACAATTTCCTTTCATGAGTACTTTTGAATCGAATTCTGGTGGAAACAATTCATATCCTTTTCAAGGAGAAAGCATTGAAGCAGCATCATCTGGATTTGTTGGAGATATAGCTTCAACTCCTAGGGTTGTTAATCAAGAACAACCACCACTTAAAATGGAAGAAAATAGAGGTTTAAATTTATCAAGAACTTCTCTTGGTGTCACTGAACATAATAACCAACAGCAATTTTATTCGTGGAATGATTTATCAGGTTCTTCGACTACTCATCTCTTATAA 1008 0.4077 MVFSSIQGYVDPPNWHHQQPNHHQQNGNDNTQLLPPLPPQVGGNIGSGGGTMGSIRPNSMADQARRAKILPPEPALKCPRCDSTNTKFCYYNNYSLTQPRHFCKACRRYWTKGGALRNVPVGGGCRRNNKKNKRSRSKSPNSTNSHEKQTSSSSAIPSHHELISHQLPQTITNLPFMASMQNHLSRYVVGNVNMGLGLREIQQQQQQTDHMGFQIGVGNGTSSVSVSGGVAGGGVGVDQWRNLQQFPFMSTFESNSGGNNSYPFQGESIEAASSGFVGDIASTPRVVNQEQPPLKMEENRGLNLSRTSLGVTEHNNQQQFYSWNDLSGSSTTHLL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03248 335 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Trre8g03248 335 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Trre8g03248 335 MobiDBLite consensus disorder prediction 138 158 - -
Trre8g03248 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 57 250 IPR045174 GO:0003700|GO:0006355
Trre8g03248 335 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Trre8g03248 335 MobiDBLite consensus disorder prediction 11 33 - -
Trre8g03248 335 MobiDBLite consensus disorder prediction 121 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03248 Trre-Chr8 30749607 30750795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03248 1 241 C2C2-Dof Transcription Factor Family AT2G37590 40.304 5.06e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre8g03248 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03248 - - gmx:100801154 321.242