Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02307 ATGACAGAGGTTAAAGACCCTGCGATAAAGCTTTTTGGAAGGACAATTCCACTTCCACTGATCATCCCTAATGAATCTTCAACTCCTTCTTCTTCTCCTTCTCCACCAGAATTGAACTCTGCAATACAACAAGAAACTGAGGAACCGTCAAGGAAAGAACTCGCCACTACACAAGATGATGATGATGCTTCACAACAGACCGCAGAGGATTTGAAATCTCTCACAACATCTTCAGTTATACTTGAGAATCCTCCTAAGACTCCCTCAGCCGAAACCGAGAATTCATTACTGAAATCTTCTACAAATGGAGAACAAAGCGAGACTAGTGTTTCCGAAGAAAAAACTCTAAAGAAACCTGACAAAATAATTCCATGCCCGCGATGCAATAGTATGGAAACCAAATTTTGTTACTTCAACAATTATAACGTCAACCAGCCTCGTCATTTTTGCAAAAAATGTCAACGATACTGGACTGCAGGAGGAACAATGAGAAATGTTCCTGTTGGTGCTGGTCGCCGCAAGAACAAGAACTTATCTAGCTCGCATTATCGACACTTGATGATTCCAGAGGCCGCTAAACTTAATTCCCCTAATGGATTACATATGGGAAATGGAGCAGCTGTCTTGGCGTTTGATTCAGGTTCACCGCTTTGTAATACCATGGCTTCTGTATTGAACATTGCTGAGAGAACACAGAATTGTGTGCCAAATGGTTTTCATCATGCAAACTCGAACGGAGTTTCGGTTACAACTTCAACTTCATCAGAGAGGAAAGGCCACACTGACACCAATGGATCGGTGGATAAAAGAGTTGAAGGTTTCCGTCCTCAATTGCAATATATTCCAAGTCCCCTTTTGCCTTATCCATGGAGTTCTGCAATGCCACCTCCTGCATTTTGTCCACCAAACTATCCATTAGCATTCTATGCTCCAGTAACTCCACCTGCATATTGGGGTTGTGTGCCACCACCATGGAATATGCCATGTATCTCATCAGAAAGTGCTTCTGTTAACCACAGTGACTCTGCTCATACTTCTGTCCCATATTCACCAACTTTAGGGAAACATTCAAGAGATGGAAACATCATTACCTCAGTCAACTCACAAAAAGAAAATCCGGATAAAGAACACAATAATACCGAAAGCAGCGTTTTGACCCCGAAAACACTTAGATTTGATGACCCAAATGAAGCCGCAAAGAGTTCTTTATGGTCAAAGCTTGGGATCAATAATGACAAAGCCAATTCTATCAATGGAGGAGGCATGTTCAATGGATTTCAATCCAAAGGAAAGGAAATGAATCACTCGGTCGAAGCATCTCCGCTGATGTATGCCAACCCTGCAGCTTTATCGCGGTCCCGTACCTTTCAGGAGGGAACCTAA 1383 0.4244 MTEVKDPAIKLFGRTIPLPLIIPNESSTPSSSPSPPELNSAIQQETEEPSRKELATTQDDDDASQQTAEDLKSLTTSSVILENPPKTPSAETENSLLKSSTNGEQSETSVSEEKTLKKPDKIIPCPRCNSMETKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNLSSSHYRHLMIPEAAKLNSPNGLHMGNGAAVLAFDSGSPLCNTMASVLNIAERTQNCVPNGFHHANSNGVSVTTSTSSERKGHTDTNGSVDKRVEGFRPQLQYIPSPLLPYPWSSAMPPPAFCPPNYPLAFYAPVTPPAYWGCVPPPWNMPCISSESASVNHSDSAHTSVPYSPTLGKHSRDGNIITSVNSQKENPDKEHNNTESSVLTPKTLRFDDPNEAAKSSLWSKLGINNDKANSINGGGMFNGFQSKGKEMNHSVEASPLMYANPAALSRSRTFQEGT 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02307 460 MobiDBLite consensus disorder prediction 1 116 - -
Trre8g02307 460 ProSitePatterns Zinc finger Dof-type signature. 125 161 IPR003851 GO:0003677|GO:0006355
Trre8g02307 460 MobiDBLite consensus disorder prediction 334 369 - -
Trre8g02307 460 PANTHER CYCLIC DOF FACTOR 2 2 459 IPR045174 GO:0003700|GO:0006355
Trre8g02307 460 MobiDBLite consensus disorder prediction 247 268 - -
Trre8g02307 460 MobiDBLite consensus disorder prediction 21 45 - -
Trre8g02307 460 MobiDBLite consensus disorder prediction 68 109 - -
Trre8g02307 460 ProSiteProfiles Zinc finger Dof-type profile. 123 177 IPR003851 GO:0003677|GO:0006355
Trre8g02307 460 MobiDBLite consensus disorder prediction 334 387 - -
Trre8g02307 460 Pfam Dof domain, zinc finger 121 177 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02307 Trre-Chr8 18470663 18473162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02307 4 458 C2C2-Dof Transcription Factor Family AT5G39660 38.370 2.07e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre8g02307 zf-Dof 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02307 - - gmx:100813315 547.354