Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g01729 ATGGATCCTTCTAGTGGACAACACCAGCAAATGTCTAACCAGTCATTGGAGAACATGTTAACATGTTCAAAAACACAAGAAGACAAAAAGCCAAAACCTCAACCAGAAGCTCTAAAATGTCCAAGATGTGACTCAAGTAACACCAAATTTTGTTACTACAACAATTACAGTCTTTCTCAACCAAGATATTTCTGCAAATCATGTAGAAGATATTGGACAAAAGGAGGTACATTAAGAAATGTTCCTGTTGGTGGGGGGTGTAGAAAGAACAAAAGATCATCATCATCAACATCAAAAAGAACACAAGATCAAACATTTCCAACAAATCCAAATCCACTAACTTGTTTCCCTTCATTGTCTTATGATACCAATGATCTTACACTTGCATTAGCTAGGCTTCAAAAGGGTCATCTTGGATTTGATCATGAACATGATTTTTCAATTTTAGGAAACCACACAAACATTAACACAAACACCTCATGTGCAATTCTTAACAATCATGGTATGAACAATTCTTCCAACAACCATGGATTCTTTGAAGCACTAATTGGATCTCAGAACAATGCTCAAAATCTTTACTACACTGGGGAAGTAGATAATGGCAATGCTAATGGTGAAATGATGTTACCATATGATCATGAAATGAGCATTGCAACTACTCAAGCAGTGACAGTTACTACAATGAAACAAGAAATGTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTGGGTTTTCCATGGCAGTTCAATAATTCTGACACAAACATGGCTGAAATTGACCACTCAGGAAGAAGTGGTTGGAATGGTCTCAATTCATCTTGGCATGGCCTTCTCAATAGCCCCCTAATGTAG 858 0.366 MDPSSGQHQQMSNQSLENMLTCSKTQEDKKPKPQPEALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSTSKRTQDQTFPTNPNPLTCFPSLSYDTNDLTLALARLQKGHLGFDHEHDFSILGNHTNINTNTSCAILNNHGMNNSSNNHGFFEALIGSQNNAQNLYYTGEVDNGNANGEMMLPYDHEMSIATTQAVTVTTMKQEMCNVREQNENRVLLGFPWQFNNSDTNMAEIDHSGRSGWNGLNSSWHGLLNSPLM 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g01729 285 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Trre8g01729 285 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g01729 285 MobiDBLite consensus disorder prediction 1 38 - -
Trre8g01729 285 MobiDBLite consensus disorder prediction 23 37 - -
Trre8g01729 285 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Trre8g01729 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 214 IPR045174 GO:0003700|GO:0006355
Trre8g01729 285 MobiDBLite consensus disorder prediction 83 111 - -
Trre8g01729 285 Pfam Dof domain, zinc finger 37 92 IPR003851 GO:0003677|GO:0006355
Trre8g01729 285 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g01729 Trre-Chr8 13653231 13654822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g01729 1 285 C2C2-Dof Transcription Factor Family AT2G28510 41.121 1.95e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre8g01729 zf-Dof 8.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g01729 - - gmx:100799737 394.815