Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00697 ATGGCTTTTACTTCCATACAAGCAGCTTATCTTGATGCAGCCAACTGGCAACAACATGAGCAGCAACAGAATCATCATCAACATGCCGGAAACGGTGGTTCGGTTTCTCAACAACTGTTTCAGACACCACCACCAGCACCACCACAGACACAGTCTCAACCTCATGGAGGAGCAACTACCGGAGGATCAATTAGGCCGGGATCGATGACTGACAAGGCAAGGACGGCGAACATGCCTATGCCAGAAGCAGCACTGAAATGTCCACGTTGCGAATCGACCAACACAAAATTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCAAGACACTTCTGCAAGACTTGCAGAAGGTATTGGACGAGAGGTGGAGCTTTAAGGAATGTCCCGGTTGGCGGAGGCTTCCGGAGAAACAAGAGATCAAGCAAAAGTAGCAACAATGGTAACTCAACAAAGTCTCCGGCTAGCTCTGACCGCCAAACCGGTAGTGCTAGTTCAACAACCTCAATCACCTCCAATAACAATCACTCGTCCGCGGATATATTAGGCCTTACACCTCAAATGTCATCATTAAGGTTCATGACACCATTACATCATAATTTTAATAACCCTAATGATTATGGAGGAGGAGATTTAGGGTTAAACTATGGATTTAGTTACATGGGAGGAGGAGTAGGAGATTTAGGAAGTGCTTTAGTTGGTGGAAATGGTAATTCAATTTTATCTTCAAGTGGTTTAGAACAATGGAGGATGCCTATGCCTATGCCAATGCCTCAACAACATCAACAATTCCCTTTTTTGGCTAATTTGGAGGGTTCAAATGGTAATTTATACCCTTTTGAAGGAAATGTTCAAAATAATGAGATGATAACTAGTGGTGGATATGTGAGGCCAAAGTTGAGTTCAACTTCTGGAATTATGACTCAACTAGCTTCTGTGAAAATGGAAGATAGTATTAATAGGGGCTTTTTGGGAATTAACACCATCAATAATAACAATAATCAAGGAAGTGAACAATATTGGAATAGTGCTGTTGTTATTGGTGGTAACTCTTCTGCAGCTAATTGGAATGATCATGTTTCTGGTTTTAGCTCTTCATCTAATACTACTAGCAATCAGATGTAG 1122 0.4189 MAFTSIQAAYLDAANWQQHEQQQNHHQHAGNGGSVSQQLFQTPPPAPPQTQSQPHGGATTGGSIRPGSMTDKARTANMPMPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSSKSSNNGNSTKSPASSDRQTGSASSTTSITSNNNHSSADILGLTPQMSSLRFMTPLHHNFNNPNDYGGGDLGLNYGFSYMGGGVGDLGSALVGGNGNSILSSSGLEQWRMPMPMPMPQQHQQFPFLANLEGSNGNLYPFEGNVQNNEMITSGGYVRPKLSSTSGIMTQLASVKMEDSINRGFLGINTINNNNNQGSEQYWNSAVVIGGNSSAANWNDHVSGFSSSSNTTSNQM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00697 373 MobiDBLite consensus disorder prediction 137 180 - -
Trre8g00697 373 MobiDBLite consensus disorder prediction 17 74 - -
Trre8g00697 373 MobiDBLite consensus disorder prediction 126 180 - -
Trre8g00697 373 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Trre8g00697 373 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Trre8g00697 373 MobiDBLite consensus disorder prediction 52 66 - -
Trre8g00697 373 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 49 274 IPR045174 GO:0003700|GO:0006355
Trre8g00697 373 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Trre8g00697 373 MobiDBLite consensus disorder prediction 17 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00697 Trre-Chr8 4964047 4965397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00697 1 249 C2C2-Dof Transcription Factor Family AT2G37590 46.899 1.91e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre8g00697 zf-Dof 3.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00697 - - pvu:PHAVU_010G013500g 307.76