Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04359 ATGTTAGACAACAACAACACTGCTACTAATTCCTCTTCTGATACTGCTTTTGCATTATCAGAAAATGGGGGTGCTAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAAGTTGTGTCTTTGTCACCAAAGACTTTGTTAGAATCTGATAGATATGTTTGTGAGATCTGTAACCAAGGTTTTCAAAGAGACCAGAATCTTCAAATGCATAGGAGAAGACACAAAGTACCATGGAAATTATTGAAAAGAGAAACAACACAAGGGTTAAAAAAGAGGGTTTTTGTTTGTCCAGAACCAAGTTGTTTGCATCATGATCCTTGTCATGCACTTGGTGATCTTGTTGGAATTAAGAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGATAAATGTAACAAAGGTTATGCTGTTCAATCTGATTATAAAGCTCATATCAAAACTTGTGGTACCAGAGGACATTCGTGTGATTGTGGTCGTGTGTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGATGCATGCACTATAAGAGGGAAACACCAACCAGATTTACAAGCAACAACAATGCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAAGTGAGGCAAATTTTAGTATATCAGCCCCATTACAAGGACTACCGGTACTTCCGAAACCACCCGATAAACCATCATCAACACCTACCTTATTAACCAATTCAGATATACACAACAAACCTTCCACCTCTCATCACCACCATAACTTAGAACTTCAACTCCTATCACCTTCTTCTATAAAACCTCAAGAAGAAAAACAAAGTTCAAAGGAAATTCAAACCTATGAAACAACTCATTTGAAACTTTCAATAGGGAGTAACAATGAATCAGAGAAACAAAGGAATTATACTTCTACATTGGAAGTAGCAAGGTTGAAGGAGTTTACCAATGAGGAGCTAAAATTGGCAATGTCAGAAAAGGTTTATGCAGAAGAAGCTAGAAAAGAAGCTAAAAGACAAATTGAGATAGCTGAGGTTGAGTTTGAAAATGCTAAAAGAATAAGGAAACAAGCACAAGATGAACTTGGAAAAGCTGAAGCTTTGAGAAAACAAGCTGTTAAGAAAATAAGTAACACTGTTATGGAAATAACATGTCAAGCTTGTAAACAACAGTTTCAATCTTCAACTTCTGGTGTTCCATCAGAAGAAACATCTATTGTTATGGGTTACATGTCTTCAGCAACCACAGAAGGAGAAGCAGAATGA 1281 0.3677 MLDNNNTATNSSSDTAFALSENGGANNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGLKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTIRGKHQPDLQATTMQPACSSRTASSTSPSSEANFSISAPLQGLPVLPKPPDKPSSTPTLLTNSDIHNKPSTSHHHHNLELQLLSPSSIKPQEEKQSSKEIQTYETTHLKLSIGSNNESEKQRNYTSTLEVARLKEFTNEELKLAMSEKVYAEEARKEAKRQIEIAEVEFENAKRIRKQAQDELGKAEALRKQAVKKISNTVMEITCQACKQQFQSSTSGVPSEETSIVMGYMSSATTEGEAE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04359 426 MobiDBLite consensus disorder prediction 1 22 - -
Trre7g04359 426 MobiDBLite consensus disorder prediction 397 417 - -
Trre7g04359 426 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Trre7g04359 426 Gene3D Classic Zinc Finger 112 184 - -
Trre7g04359 426 SMART c2h2final6 135 162 IPR013087 -
Trre7g04359 426 SMART c2h2final6 99 129 IPR013087 -
Trre7g04359 426 SMART c2h2final6 57 79 IPR013087 -
Trre7g04359 426 MobiDBLite consensus disorder prediction 397 426 - -
Trre7g04359 426 MobiDBLite consensus disorder prediction 194 221 - -
Trre7g04359 426 MobiDBLite consensus disorder prediction 1 44 - -
Trre7g04359 426 Gene3D Classic Zinc Finger 35 100 - -
Trre7g04359 426 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
Trre7g04359 426 MobiDBLite consensus disorder prediction 194 260 - -
Trre7g04359 426 Coils Coil 332 380 - -
Trre7g04359 426 FunFam protein indeterminate-domain 12-like 36 105 - -
Trre7g04359 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Trre7g04359 426 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 381 IPR031140 -
Trre7g04359 426 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04359 Trre-Chr7 51472511 51475070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04359 1 426 C2H2 Transcription Factor Family AT2G01940 54.867 1.64e-159 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g04359 zf-C2H2 0.004 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04359 7 51472511 51475070 Trre7g04359 7 51472511 51475070 ECH