Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04288 ATGAGTGAAGGAAACAAGATATTTCCTATTTTGTTAATCACCATTGCAGTAGTAGCAAGTATTGGATTAACACAAACACAAGCACAACCAGAAGCAAATTTCCAGTGCATAACACAAAACGCCACGTGTCGAAGCATAACAGAATACACAAACCCAAACACAACAACCTTAAAACAAATCCAAACCCTCTTCGGCATAAAACACTACCTCGATTTCCTCGGAGTTAACAATCTTCCAACAAACACAACAAACAGTTACAAAGTAAATCCCAACACAGTCATCAAAGTTCCATTTCAATGTAAATGTGATAACGGAACAGGAAAATCGAACCATGTTCCACAGTACAAAATTAAACCGGGTGACACGTTGGATGATATAGCAAGAACCCGGTTCGCTAGTTTGGTTAAATATCAACAGATCCAAACCGCTAATAAGATTGTTGATGCTGATAATATAACTGCTGGTGATACAATTTGGATTCCTTTGCCTTGTAGTTGTGATAAGGTGGATGGGAATAGTGTTATGCATTATGCACATATTGTTGAATCTGGAAGTAGTATTGAATCTATTGCTCAACAATTTGGTGCTACTCAACAGAGTTTACTCACAATTAATGGTATTAAAGATCCTAAATCACTTGAAGCCGGTCAGATTCTTGATGTTCCTCTTCCAGTTTGTAACTCTAGCGTGAAAAATGATTCATTGGATTTTCCATTGCTTGTACCAAATGGGACTTACTTCTACACTGCAAATGAATGTGTCAAATGTAAATGCGATTCTATCAACAATTTTGTGTTGCAATGCGACCCATCAAACCGAAAACCGATCAATAAATGGTCGGTCTGTCCATCTACAAGATGTTCTGGGAGTGTGTTGATTGGGAACACTACATCAACAGATTCGTGTAGCCGTACAGTTTGTGGCTACACTGGTTATACTTCTAGCAATATCTCTACTGCTCTTGTTACCCAAAACACTTGTGCTGCTGTGGCACCGGACGGCGGCGGCGGCAATTCGGATTCAGGGGCATCCAGGAGCATATTGAATAAGCTTCTTGTTCTCATTCACTTCCTATTATTTTCTGTTTATCTTTTGTAG 1098 0.3907 MSEGNKIFPILLITIAVVASIGLTQTQAQPEANFQCITQNATCRSITEYTNPNTTTLKQIQTLFGIKHYLDFLGVNNLPTNTTNSYKVNPNTVIKVPFQCKCDNGTGKSNHVPQYKIKPGDTLDDIARTRFASLVKYQQIQTANKIVDADNITAGDTIWIPLPCSCDKVDGNSVMHYAHIVESGSSIESIAQQFGATQQSLLTINGIKDPKSLEAGQILDVPLPVCNSSVKNDSLDFPLLVPNGTYFYTANECVKCKCDSINNFVLQCDPSNRKPINKWSVCPSTRCSGSVLIGNTTSTDSCSRTVCGYTGYTSSNISTALVTQNTCAAVAPDGGGGNSDSGASRSILNKLLVLIHFLLFSVYLL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04288 365 CDD LysM 115 160 IPR018392 -
Trre7g04288 365 SUPERFAMILY LysM domain 114 162 IPR036779 -
Trre7g04288 365 Gene3D LysM domain 112 167 IPR036779 -
Trre7g04288 365 Gene3D LysM domain 168 234 IPR036779 -
Trre7g04288 365 SMART LysM_2 114 161 IPR018392 -
Trre7g04288 365 SMART LysM_2 178 222 IPR018392 -
Trre7g04288 365 Pfam LysM domain 115 161 IPR018392 -
Trre7g04288 365 Pfam LysM domain 179 222 IPR018392 -
Trre7g04288 365 CDD LysM 179 221 IPR018392 -
Trre7g04288 365 SUPERFAMILY LysM domain 177 223 IPR036779 -
Trre7g04288 365 ProSiteProfiles LysM domain profile. 177 221 IPR018392 -
Trre7g04288 365 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 10 328 - -
Trre7g04288 365 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04288 Trre-Chr7 50843791 50846471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04288 12 356 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 42.939 1.17e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g04288 - - cam:101506878 511.146