Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03506 ATGTTTGGTAACTGTGTTCATGAGAAAACGGTAATCACTTCTAACAAATTGACACAGAGTACTGATATAGATGATCATCATACTAAAATTTCAATGGCTTCTTCAAGTGGTGTTAATAATAATAATAATAGGGTTATGGAAAAACCAGGACAAGAACTTGTTCAACAACAACAACAAGCTTTAAGATGTCCACGTTGTGATTCATCAAACACTAAATTCTGTTACTACAATAACTACAGTTTATCACAACCAAGACACTTTTGCAAAGCTTGTAAAAGATATTGGACAAGAGGTGGAACTCTTAGAAATGTTCCTGTTGGTGGTGGTTGCAGAAAAAACAAACGTGTTAAAAGACCAAATCATTCTTCTTCTTCTTCCAACATTCATTCTCCTTCTTCTTCAACTCCTACTACTGTTACTGCTAATTCAAACCCTTCTTCTCAACAACAACATAGTTTTGATGTTGCTTCTACTTCAAACCATATCAATACTCTTCTTTATGGTAACTCTTGTCATGATGTTATGAATTTTCCTTTTTCAACAAGGTTTAATTCTACTAGAGTTTCAAGTTCTGGTTCTGGTTCTGGTTATGATAATCATCTTCAGCAAAATGGTCTTGGATTAGGTTTTTCATCTGGTTTAGCTAATCTTAATCATCATGATGATTATAGAAATGGGTTTAGTACTACTTCAAATAATAACAATTATAGTTCCATCTTTGGTTCTTCTTCCATGAGTTCTACTACTCCAGTTATGAATTCTCTACTTAGCTCTACACTACTACAACAGAAATTCATGAGTACTGTCGGTGGCGGCGGCAACGGAGGAATGAAAGGTGATCTTTTTCATCATCATGATATGAAAATGGAAGGAAATAGTAGAAGTGATGAGGTTGAGATGATGGGTTCAAAAGAAGGACTAAATAGGTTGGATCAGTGGAACAACAATAATCACATGAATGGTAGTAATGGTACTGTTGCTTTTCAAAACCAGATGGAAAATATGGGTTTATCTGATTCATCTTCTTCTCTTTATTGGAACAATAGTAACAACAACATAGCAACAACAGGTTTGGGTAGTAGTGTTTGGAGTACTGATCAACCTAATACTATTGGTCCTAATTCAGTTACTTCTCTGATCTAG 1143 0.3456 MFGNCVHEKTVITSNKLTQSTDIDDHHTKISMASSSGVNNNNNRVMEKPGQELVQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNHSSSSSNIHSPSSSTPTTVTANSNPSSQQQHSFDVASTSNHINTLLYGNSCHDVMNFPFSTRFNSTRVSSSGSGSGYDNHLQQNGLGLGFSSGLANLNHHDDYRNGFSTTSNNNNYSSIFGSSSMSSTTPVMNSLLSSTLLQQKFMSTVGGGGNGGMKGDLFHHHDMKMEGNSRSDEVEMMGSKEGLNRLDQWNNNNHMNGSNGTVAFQNQMENMGLSDSSSSLYWNNSNNNIATTGLGSSVWSTDQPNTIGPNSVTSLI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03506 380 MobiDBLite consensus disorder prediction 358 380 - -
Trre7g03506 380 Pfam Dof domain, zinc finger 59 115 IPR003851 GO:0003677|GO:0006355
Trre7g03506 380 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
Trre7g03506 380 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Trre7g03506 380 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 47 262 IPR045174 GO:0003700|GO:0006355
Trre7g03506 380 MobiDBLite consensus disorder prediction 120 154 - -
Trre7g03506 380 MobiDBLite consensus disorder prediction 105 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03506 Trre-Chr7 41695221 41696564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03506 47 122 C2C2-Dof Transcription Factor Family AT5G65590 72.368 1.64e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre7g03506 zf-Dof 4.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03506 - - psat:127105320 374.4