Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01928 ATGTCTGATTCATTCTGTAGCTTTCTCTCTGTTACTCCAAATTCCAACCATAATTCCCATGCACCTCCAAAACTCACTACTATCTCCTCAATTCTTCAACCTTTTTCTATTTGCACCCATTGCAACCATTTTCTCCCCTTTAATCACCATGTTGCTCATGTAGCAGAGCAAGGTACAAGCAATAATATGCAGCCACAACCAAGCTCAAGATGGAGTCCAACACCAGTACAATTACTAGTACTTGAAGAATTGTATAGGCAAGGGATGAAAACACCATCAGCTGAACAAATCCAACAAATAGCTTCACAGCTTCGACAATTCGGGAAGATCGAAGGGAAAAATGTGTTCTATTGGTTCCAAAATCACAAAGCGAGAGAGCGACAGAAGCGTCGTCGCAGGGAGATGGAGGGAACAACTGGTTCTTCAACTGAAGTTAAAATTGAGAAAGAGAAGTACCTTACTGAAAATTCAGAAAAGCAAGAAAATGCAGGATTGAAAGAGACAGGTAATGGAGTTAAAGAGACAAAGAAGTGGGCAACCACTTCAAACTTCAGTGAACAAGCAGAGGATATAGCAGAAAAGGGATCAATACAAGTTTTGAGGAAAAACATAGGTGCAGAAAGACAAGGAAAGTGCCAAAATATTGAAATTCCTTATTACTTGACTCCTTTTACTAAAAATTCTTCATTAGCAGCAGCATACAGAACATGTAGTAATAATAGCACACCTCATCCAAATTATGAAGAACAAAATGCAGATTATCCTAAGACACTGGATCTTTTTCCAATTAAGGAGGATGAACAAGATGGAAGTTGTCTCACTGAGAGAAAATCTATGGACACTCATGAAATCACATCTTCCAATCAGTTTTTTGAGTTTCTTCCTTTAAGAAATTGA 897 0.3824 MSDSFCSFLSVTPNSNHNSHAPPKLTTISSILQPFSICTHCNHFLPFNHHVAHVAEQGTSNNMQPQPSSRWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEGTTGSSTEVKIEKEKYLTENSEKQENAGLKETGNGVKETKKWATTSNFSEQAEDIAEKGSIQVLRKNIGAERQGKCQNIEIPYYLTPFTKNSSLAAAYRTCSNNSTPHPNYEEQNADYPKTLDLFPIKEDEQDGSCLTERKSMDTHEITSSNQFFEFLPLRN 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01928 298 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 56 289 IPR044555 GO:0003700|GO:0099402
Trre7g01928 298 Gene3D - 52 141 - -
Trre7g01928 298 SMART HOX_1 66 133 IPR001356 GO:0003677
Trre7g01928 298 MobiDBLite consensus disorder prediction 130 162 - -
Trre7g01928 298 MobiDBLite consensus disorder prediction 126 169 - -
Trre7g01928 298 CDD homeodomain 67 124 IPR001356 GO:0003677
Trre7g01928 298 Pfam Homeodomain 68 128 IPR001356 GO:0003677
Trre7g01928 298 ProSiteProfiles 'Homeobox' domain profile. 64 129 IPR001356 GO:0003677
Trre7g01928 298 FunFam WUSCHEL-related homeobox 4 68 135 - -
Trre7g01928 298 SUPERFAMILY Homeodomain-like 62 131 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01928 Trre-Chr7 15199224 15201882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01928 68 221 Wox Gene Family AT3G18010 47.403 2.39e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre7g01928 Homeodomain 3.4e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01928 7 15199224 15201882 Trre7g01928 7 15199224 15201882 ECH