Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04013 ATGTTCCAACAAAGACATAACAATATTAATACTAGCGAGCTAGATCAAATGTTGCATATGCTAACTTCTAATTCTATTCCAATGCCATTTCCAACAACCTCAATGGACAAATCAAATTCAAAGTGGAAACCAAACATTGAAATTGCTCCAAATTGTCCTCGTTGTGCTTCAACTCACACTAAATTTTGTTACTACAACAATTACAGCCTCTCACAGCCAAGATATTTTTGCAAAGGTTGTAGACGCTATTGGACTAAAGGTGGCTCTCTTCGAAATGTTCCCGTCGGTGGTGGTTGCCGTAAAACTCGTCGCGGAAAGGCTGTTAGAAATTCTCAGAATTCTGACCGCCTTTCCGCAAATGGTTCTGTTGATGATGGAGATGGTAATCATCAACAGAATCAAAATAACGGGTCGCGTGATATAGATATGGCGGTTGTTTTCGCCAATTTCTTAAACCAAAATCCAAATAGTACTACTACTACTACTCCACCTCATCATCATGGTGATGAGGAATTAGAAATTGAGAGTGAGCCTAACAATAATAATGGCTTGTGTTCTTCTTCAAACAATGGTAACAATTTGTCGACACCGGATAGTGTCGAAACAGAGAATGATGCAGTGGTTCAGAGTGAGAATCCTTTTGATCAAGAATTGAGTTTGAGTGGAATTGAATATGATCAATTTGAAGGATTATTAGGTGTTGATGAAGATGTGGTACAAGATGTTCTATGGTCAGAATCTGATGCTATGAATATGATGGTGTCATGTTCAAATAATTATACATGGCAACAACCATCTACCATGATGCAAATGGAATTGGAGTATTCAATGCCATTGAATGAAAATTGTGGTATTCATCATGATCAATTATTACCTGTTAATGTTAATTCAAATTCTACTAATGTCAATTTGATAAGTGATCAAAGTTGGATTAGTAATTCTTGGGATTCTTTTGATCTTTCAACTATGGAAGTCTTCTCATCAAGTTCAAGACCTTAA 999 0.3644 MFQQRHNNINTSELDQMLHMLTSNSIPMPFPTTSMDKSNSKWKPNIEIAPNCPRCASTHTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRGKAVRNSQNSDRLSANGSVDDGDGNHQQNQNNGSRDIDMAVVFANFLNQNPNSTTTTTPPHHHGDEELEIESEPNNNNGLCSSSNNGNNLSTPDSVETENDAVVQSENPFDQELSLSGIEYDQFEGLLGVDEDVVQDVLWSESDAMNMMVSCSNNYTWQQPSTMMQMELEYSMPLNENCGIHHDQLLPVNVNSNSTNVNLISDQSWISNSWDSFDLSTMEVFSSSSRP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04013 332 MobiDBLite consensus disorder prediction 153 212 - -
Trre6g04013 332 MobiDBLite consensus disorder prediction 94 138 - -
Trre6g04013 332 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Trre6g04013 332 Pfam Dof domain, zinc finger 50 103 IPR003851 GO:0003677|GO:0006355
Trre6g04013 332 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Trre6g04013 332 MobiDBLite consensus disorder prediction 177 212 - -
Trre6g04013 332 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 198 IPR045174 GO:0003700|GO:0006355
Trre6g04013 332 MobiDBLite consensus disorder prediction 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04013 Trre-Chr6 42286025 42287023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04013 42 158 C2C2-Dof Transcription Factor Family AT3G52440 58.678 1.67e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre6g04013 zf-Dof 5.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04013 - - mtr:11416134 467.618