Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02734 ATGGAATCATCTGCAGATCATTGGTTACAGGGCACAATTCACGAGGAGTCAGGAATGGATTCATCTTCACCATTATCTGGTGACATGCTAACATGTTCAAGACCATCATCAATGATAGATCAAAGGAGATTAAGACCACCACATGACCTATCTCTAAAATGTCCAAGATGTGATTCAACTCACACCAAATTCTGCTACTATAACAACTACAGTCTCTCTCAGCCAAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACCAAAGGTGGAACTCTTAGAAACATTCCTGTTGGTGGAGGTTGTAGAAAAAACAAAAAAGTTTCTAACAAAAAATCCAATGATATTAATCACCATTTAGCTTCTAATAATAATAATATTCAAAACCAACCACATCATGTTCCTTCTTATCATCAAAACCCTAAAGATCTTCAACTTTCTTTCCCTGATGTTCAATTTTCTCACTTAAGTAACTTACTTGGAACTAATGGAGCATTAGGAAACCCTAATTTCATGCTTGAGAGTAAGTATAGTAATGTTGGTATGCTTGAGAATCCTAGACCTATTGATTTCATGATGGAAAGTAAGTTAGAAGGTATAATTGGAAGTAGTTCTAGGAATTTTGATAATTATTTTGGAAATGGTGATCATATGAGTATGAATATGGGAGTTGGTGATATGATGAATAGTACTCAAAATGGTTTGTCACAAAATTTTCATCATGCATTTGGTGGCATGTCATTTGATGGAGGAAACAATAATAACAATGGTGCTTATTTAATGGATTCTTGTCAAAGACTTATGCTTCCTTATGATGCTAATGATCATGAGGATCATAATGATGGATCAATTGATGTGAAACCAAACCCTAAATTATTGTCACTTGAATGGCAACAAGATCAAGGTTGCTCTGATGTTGGAAAAGAGTCATTTGGATATGGATCATGGAGTGGTAGTATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTGA 1005 0.3532 MESSADHWLQGTIHEESGMDSSSPLSGDMLTCSRPSSMIDQRRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSNKKSNDINHHLASNNNNIQNQPHHVPSYHQNPKDLQLSFPDVQFSHLSNLLGTNGALGNPNFMLESKYSNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNYFGNGDHMSMNMGVGDMMNSTQNGLSQNFHHAFGGMSFDGGNNNNNGAYLMDSCQRLMLPYDANDHEDHNDGSIDVKPNPKLLSLEWQQDQGCSDVGKESFGYGSWSGSMMNGYGSSTTNPLING 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02734 334 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Trre6g02734 334 Pfam Dof domain, zinc finger 51 106 IPR003851 GO:0003677|GO:0006355
Trre6g02734 334 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Trre6g02734 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 226 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02734 Trre-Chr6 24427376 24428942 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02734 8 332 C2C2-Dof Transcription Factor Family AT5G62940 42.706 1.32e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre6g02734 zf-Dof 2.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02734 - - gmx:100806697 461.455