Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02733 ATGGGTTTATCTTCTCTTCACGTCTGCAATATGGAATCATCTGCAGATCATTGGTTACAGGGCACAATTCACGAGGAGTCAGGAATGGATTCATCTTCACCATTATCTGGTGACATGCTAACATGTTCAAGACCATCATCAATGATAGATCAAAGGAGATTAAGACCACCACATGACCTATCTCTAAAATGTCCAAGATGTGATTCAACTCACACCAAATTCTGCTACTATAACAACTACAGTCTCTCTCAGCCAAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACCAAAGGTGGAACTCTTAGAAACATTCCTGTTGGTGGAGGTTGTAGAAAAAACAAAAAAGTTTCTAACAAAAAATCCAATGATATTAATCACCATTTAGCTTCTAATAATAATAATATTCAAAACCAACCACATCATGTTCCTTCTTATCATCAAAACCCTAAAGATCTTCAACTTTCTTTCCCTGATGTTCAATTTTCTCACTTAAGTAACTTACTTGGAACTAATGGAGCATTAGGAAACCCTAATTTCATGCTTGAGAGTAAGTATAGTAATGTTGGTATGCTTGAGAATCCTAGACCTATTGATTTCATGATGGAAAGTAAGTTAGAAGGTATAATTGGAAGTAGTTCTAGGAATTTTGATAATTATTTTGGAAATGGTGATCATATGAGTATGAATATGGGAGTTGGTGATATGATGAATAGTACTCAAAATGGTTTGTCACAAAATTTTCATCATGCATTTGGTGGCATGTCATTTGATGGAGGAAACAATAATAACAATGGTGCTTATTTAATGGATTCTTGTCAAAGACTTATGCTTCCTTATGATGCTAATGATCATGAGGATCATAATGATGGATCAATTGATGTGAAACCAAACCCTAAATTATTGTCACTTGAATGGCAACAAGATCAAGGTTGCTCTGATGTTGGAAAAGAGTCATTTGGATATGGATCATGGAGTGGTAGTATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTGA 1035 0.3546 MGLSSLHVCNMESSADHWLQGTIHEESGMDSSSPLSGDMLTCSRPSSMIDQRRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSNKKSNDINHHLASNNNNIQNQPHHVPSYHQNPKDLQLSFPDVQFSHLSNLLGTNGALGNPNFMLESKYSNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNYFGNGDHMSMNMGVGDMMNSTQNGLSQNFHHAFGGMSFDGGNNNNNGAYLMDSCQRLMLPYDANDHEDHNDGSIDVKPNPKLLSLEWQQDQGCSDVGKESFGYGSWSGSMMNGYGSSTTNPLING 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02733 344 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Trre6g02733 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 236 IPR045174 GO:0003700|GO:0006355
Trre6g02733 344 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Trre6g02733 344 Pfam Dof domain, zinc finger 61 116 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02733 Trre-Chr6 24427346 24428942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02733 1 342 C2C2-Dof Transcription Factor Family AT5G62940 43.147 1.21e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre6g02733 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02733 - - gmx:100806697 474.552