Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02192 ATGCACAGAACCATTTTGTTCTTGTTCCTTTCATCATTACTCTTCATAACAACAACCTCAAAATCAACAATCGAACCATGCACAAACTCAGACACATGTAACGCATTACTCGGTTACACACTCTACACAAACCTCAAAGTCTCCGAAGTTTCTTCTCTTTTTCAAATCGATCCAATCTCTCTTCTAACCGCCAATGCCATTGACATCTCATATCCAGATGTAGAACATCACATCCTCCCTTCAAAACTTTACCTCAAAATCCCAATCTCATGTTCATGTGTTGATGGAATTCGTAAATCTGTTTCAACAAACTATAAGATTCGTCCTTCTGATACTCTTTCATCTATTGCTGATTCTGTTTATGGTGGTTTAGTTTCTTCTGATCAACTTAGAGAAGCTAATTCTATAACTGATCCTAATGTTCTTGATGTTGGACAGAATCTTGTTGTTCCTCTTCCTTGTACTTGTTTCAATGGTTCTGATAATGCTTTGCCTGCTATTTATTTGTCTTATGTTGTTCAGCCACTTGATAGTTTAGGTTCTATTGCTTCTAGGTATTTTACTACTCTTACTGATTTGATGAATGTTAATGCTTTGGGAGGTACTTCTATCTCTAATGGTGATATTCTTGCTATTCCTATTCCGGCTTGCGCATCAAATTTCCCAAAATATTCTTCTGATTTTGGCTTGCTTGTCCCTAATGGAAGTTATGCCATTACAGCAGGCCATTGTGTGCAATGTAGCTGTGGACCCCGAAACTTAAATTTGTACTGTATGCCGGCTTCTCTAGCTGTTTCTTGCTCCAGCATGCAATGTAAAAACAGCAATCTTATGCTCGGCAATGTTACCATTCAACAGACTAGTGGTGGTTGCAATGTGACTTCTTGCATTTATGATGGTATTGCTAATGGCACCATAGTGACAACGTTGACTCCATCCCTTCAGCCTCGATGTCCAGGGCAGCAGGAATTCCCTCCTCTTATCGCCCCACCTACATCTGTTGAGAAAGATTCAGTATTTGCACCGGCACCATCGCCATCATCACTGCTAGACGGAACTGATGGAAGATCACCCAAATCATCTTTCGTGCCTTCAACAGGATTTACTCCTGCCAATGGCCCTATTAGTGGAATTTCTTCTGGTGCTTCTGCTGCATGCTCCTTGGTGAAACCCTTACCGACGTTGACGCTTCCACTTGTGTTGTTACTTGTGAAGTTCATGATCCCTGTGGCATTGTAA 1239 0.4084 MHRTILFLFLSSLLFITTTSKSTIEPCTNSDTCNALLGYTLYTNLKVSEVSSLFQIDPISLLTANAIDISYPDVEHHILPSKLYLKIPISCSCVDGIRKSVSTNYKIRPSDTLSSIADSVYGGLVSSDQLREANSITDPNVLDVGQNLVVPLPCTCFNGSDNALPAIYLSYVVQPLDSLGSIASRYFTTLTDLMNVNALGGTSISNGDILAIPIPACASNFPKYSSDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKNSNLMLGNVTIQQTSGGCNVTSCIYDGIANGTIVTTLTPSLQPRCPGQQEFPPLIAPPTSVEKDSVFAPAPSPSSLLDGTDGRSPKSSFVPSTGFTPANGPISGISSGASAACSLVKPLPTLTLPLVLLLVKFMIPVAL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02192 412 Gene3D LysM domain 99 159 IPR036779 -
Trre6g02192 412 ProSiteProfiles LysM domain profile. 103 150 IPR018392 -
Trre6g02192 412 CDD LysM 170 212 IPR018392 -
Trre6g02192 412 Gene3D LysM domain 160 221 IPR036779 -
Trre6g02192 412 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 5 322 - -
Trre6g02192 412 SMART LysM_2 170 213 IPR018392 -
Trre6g02192 412 SMART LysM_2 104 151 IPR018392 -
Trre6g02192 412 SUPERFAMILY LysM domain 169 214 IPR036779 -
Trre6g02192 412 SUPERFAMILY LysM domain 104 152 IPR036779 -
Trre6g02192 412 CDD LysM 105 150 IPR018392 -
Trre6g02192 412 ProSiteProfiles LysM domain profile. 169 212 IPR018392 -
Trre6g02192 412 MobiDBLite consensus disorder prediction 336 366 - -
Trre6g02192 412 Pfam LysM domain 105 151 IPR018392 -
Trre6g02192 412 Pfam LysM domain 171 213 IPR018392 -
Trre6g02192 412 MobiDBLite consensus disorder prediction 350 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02192 Trre-Chr6 18559477 18562546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02192 8 387 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 69.452 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02192 - - gmx:100808966 651.358