Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01735 ATGATTGAAACTAAAGATCCTGCAATTAAGCTCTTTGGTAAGAAGATTCTCTTTCCTGGAGAAGTTGAAGCTCTTATTATTGATGGCGACGAAAATGTTTCGCCGCCGTCGGCTATGGTTGTAGAAGAAGAAGAGAGAGATTTTGGTGAATATGAGAATGATGAGGAAGAAGAAGAAATAGAGAAGGATCATGGAGCAGAAAATGATAATGAGAAAAAGAAAGAGACTGATCCTCCTCCAAATTCTGCAGACATCAAGAACAACAACAATTCAGCACCAACAACATTAGCTGAGCCAATTCAAAATCAAAAAACACCTTCAATAGATGAAGAAACATCAAAATCCGAAAACGAACAAAGCGACGCAGCAACAACAAACAACAAAACACTAAAGAAACCCGACAAATTACTTCCGTGTCCACGCTGCAATAGCATGGACACGAAATTTTGTTACTACAACAACTACAACATCAATCAGCCGCGCTATTTCTGCAAGGCGTGTCAAAGATATTGGACCGCGGGTGGAACAATGAGGAATGTTCCGGTCGGTGCAGGGAGAAGAAAAAGCAAGAGCAATACTTCGTCACATTATCGCCACATCACCATCTCTGAGGCTCTTGATGCAGCAAGGATCATTTCCCCGAACGGAACTCATCATCTTCAAAATTTTAAAACCAATGGTAGAGTCCTAAGCTTTGGATTGGATCATCCACAAAATTGTGATCCAATGTCAAATGTTTTCAATCCTGCAGAGAAAAAGGGTCTTAACAACACTCGAACTAATGGCGACCAGTGCTCAAGCGCGTCTTCTATTACACTTTCAAAATCTATAGAGGAAAGTGGCAAAAACATTTCACAAGAATCATTACCACAACAAAATAATGGTTTCATTCCTCAAGTTCCATGTATGACTAATGTTCCTTGGCCTTATCCTTGGAGTACCGGCGCAATTCCCTCCCCGCAAACTTTGTATCCTCCGGGATTTCCCATGTCATTTTACCCTACTCCTTTTTGGAATTGCGGTGTTCCGGGGAATTGGAATGTTCCTTGGTTTACATCTCATACTTCCGCGACAACAACTCCTATGTCTCCGAACTCTAGTCCGAAATCTCCAACACTCGGGAAGCACTCGAGGGATGAAGACGACAACATAGATAAACAAGAAAATTTGCAAAAAGTGGAATCACCAAAACAAAGAAATGGGTGTGTTTTGGTTCCAAAAACATTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCAATATGGGAAACACTTGGAATTAAGAATGAAGGTATGAGTAGGGGAGGTATGATTAAAGCATTTCAATCAAAGAATGATGGTAAAAAACATCATGTTCAAACCTCTCCAATGTTGTTGGCTAACCCTGCAGCTTTGGCTAGATCACTTAATTTTCATGAGAATTCTTAA 1431 0.4032 MIETKDPAIKLFGKKILFPGEVEALIIDGDENVSPPSAMVVEEEERDFGEYENDEEEEEIEKDHGAENDNEKKKETDPPPNSADIKNNNNSAPTTLAEPIQNQKTPSIDEETSKSENEQSDAATTNNKTLKKPDKLLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKSKSNTSSHYRHITISEALDAARIISPNGTHHLQNFKTNGRVLSFGLDHPQNCDPMSNVFNPAEKKGLNNTRTNGDQCSSASSITLSKSIEESGKNISQESLPQQNNGFIPQVPCMTNVPWPYPWSTGAIPSPQTLYPPGFPMSFYPTPFWNCGVPGNWNVPWFTSHTSATTTPMSPNSSPKSPTLGKHSRDEDDNIDKQENLQKVESPKQRNGCVLVPKTLRIDDPNEAAKSSIWETLGIKNEGMSRGGMIKAFQSKNDGKKHHVQTSPMLLANPAALARSLNFHENS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01735 476 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
Trre6g01735 476 PANTHER CYCLIC DOF FACTOR 2 4 476 IPR045174 GO:0003700|GO:0006355
Trre6g01735 476 MobiDBLite consensus disorder prediction 357 382 - -
Trre6g01735 476 Pfam Dof domain, zinc finger 135 191 IPR003851 GO:0003677|GO:0006355
Trre6g01735 476 MobiDBLite consensus disorder prediction 27 133 - -
Trre6g01735 476 MobiDBLite consensus disorder prediction 65 80 - -
Trre6g01735 476 MobiDBLite consensus disorder prediction 45 64 - -
Trre6g01735 476 Coils Coil 41 61 - -
Trre6g01735 476 MobiDBLite consensus disorder prediction 357 372 - -
Trre6g01735 476 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
Trre6g01735 476 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01735 Trre-Chr6 14238292 14240954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01735 1 474 C2C2-Dof Transcription Factor Family AT3G47500 46.400 8.07e-111 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre6g01735 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01735 - - gsj:114409713 535.028