Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05642 ATGAGGCGTAGTGGAGGAGGAATGAATTGTCAGGATTGTGGGAACCAAGCAAAAAAAGACTGTACACATCTAAGATGTAGAACTTGTTGTAAGAGTCGAGGGTTTCATTGTCAAACACATGTTAAAAGTACTTGGGTTCCAGCTTCTAAACGCCGTGAAAGACAACAACAACATCATCATCTCTCTATGTTACAACAACACTTTCATCGTCCTAAACCACACTCACTCAATCAACAACCACAACAAGGGTTTGAGTTGGGTCAATTTCCACCTGAAGTGAGTTCTCCAGGAGTAACGTTTAAGTGTGTGAGAGTGAGTTCATTGGACGGTCCAGATCATGATCAATGTGCATATCAAACGGCTGTCAACATAGGAGGACATGTTTTCAAAGGAATTCTATATGATCAAGGTCCATCAAGTCTTTACACTACTAGTACTGCACCTATTATTCATGAAGGTTCTTCTGGTGGAGTTCATCATCATCAACCTCAACAACTTGATTTCTTAACTGCTGCAACAACAGCCACAACAACCACCGGTGTCTCGTTCGACCCTTCGCTTTATTCCGCTCCGCTAAATGTTTTCATGGCTGCAGCTGGTACACAATTTTTCCACCCCCAACATCCTAATTGA 633 0.4218 MRRSGGGMNCQDCGNQAKKDCTHLRCRTCCKSRGFHCQTHVKSTWVPASKRRERQQQHHHLSMLQQHFHRPKPHSLNQQPQQGFELGQFPPEVSSPGVTFKCVRVSSLDGPDHDQCAYQTAVNIGGHVFKGILYDQGPSSLYTTSTAPIIHEGSSGGVHHHQPQQLDFLTAATTATTTTGVSFDPSLYSAPLNVFMAAAGTQFFHPQHPN 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05642 210 Pfam Domain of unknown function (DUF702) 7 139 - -
Trre5g05642 210 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 4 193 IPR007818 GO:0003700|GO:0006355
Trre5g05642 210 NCBIfam LRP1 C-terminal domain 88 138 IPR006511 -
Trre5g05642 210 NCBIfam putative zinc finger domain, LRP1 type 9 51 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05642 Trre-Chr5 56520288 56521167 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre5g05642 DUF702 1e-51 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05642 5 56520288 56521167 Trre9g01102 9 8854258 8856101 ECH
Trre5g05642 5 56520288 56521167 Trre5g05642 5 56520288 56521167 ECH
Trre1g00140 1 1072376 1073869 Trre5g05642 5 56520288 56521167 PCT