Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05623 ATGTATCCCAACCATTCATTCTCTTCAGGGTCCTATACCGATATGTTCACCACGAATCCTCCTCCGTTACCTCACAACTACTACAATGAATCTGTTGCAGGACAAAATGAAGCTAAGTTTATCACAGCTATGCAGTCCATTGATACACATTCCAATACTTGCAACTCTAATGTAGATTTTGAGCAAAATATGCAGTGCCAAGAGTTATCTCTTAGTCTCGGTACACTATTGCCTTCTACTGCTTCTGTCCCTCCATTTCAATATCAGTATCAAGACACCGGTTTTGTTTCGCTTATGAATGCTTGTCTCCCAAAGGAAACTACAATATCCAATGATGATGAGTTGAAAAGTGTTGAATGTATGGCATCTATATCTTCTGGAGGCTTTCATGACATTACCAAAAGAGACAATTTTCGCAACGCTGACCCCTCGGATCAATGCCTACAAGGTTCACAAGTTTTTCCTAACATTTTACTAAACTCTCAATATCTTAAAGCTACACAGGATTTACTTGATGAGATAGTTAATGTCCGAATCCGAAAGCAACGTGCAATGGAAAAACAAGAAAAAATCAGTGACATTGGATTAAATAACTCCAAAGACAATGATGCAAAATCTTCAGCCCCTAATGATTCTAATTCAAATACTTCTTGCGAATTATCTCCGGCAGAAAGACAAAATTTGTTGGATAAGAAGACACAGCTTTTGTCCATGTTGGATGAGGTAGATAGAAGATACAGACACTACTGCAATCAGATGCAGATTGTGGTGTCATCTTTGGACATGGTTGCTGGTTGTGGAGCAGCAGAACCGTATACTACACTTGCGTTGCGTACAATTTCGCGCCACTTTCGCAGCCTGCACGATGCAATCAGCAGCCAAATTCAAGTAATTCAAAGAAGCCTTGGGGAACAAGAAGGAATTCCTCGTCTCCGGTATGTTGATCAACAGCTTAGAAAACAAAAGGCACTTCAGCATCTCGGTGTTATGCGACAAGCTTGGAGACCTCAGAGAGGACTTCCCGAGAACTCTGTCTCAATACTACGCGCTTGGCTCTTTGAACATTTTCTTAATCCTTACCCCAAGGATTCGGAGAAAATAATGCTAGCTCGGCAGACTGGTTTGACAAGGAATCAGGTAGCGAATTGGTTCATTAATGCACGTGTACGTCTTTGGAAACCAATGGTTGAGGAAATATACAAAGAAGAGTTTAATGATTCTGAAATGAAGTGCAATTTTTCATCTGAAAATACACTCCAAGGTAAAAGAAATTATATACAACAAGAGATTGATGATAAATCAGAACAAGAGTCACAGGACAATGTACAAATAATTACTAGTGATAGTGTACAAGCATATTCCACTAAAGAACATGTGGAAAAAAATGTGATATTGGATTATGATAACGAAAGGTTGAGCGTGAAAAATGGCTTTTATTCAGAAATAGCTTGTGATAATGCCACATATGATTTATCAGAGTTTGGTGGTGGCCACCACCAGCAACACAATGTGTCTCTTGCATTGGAGTTGAGGAACTGTGAAAGTGATGTATTAGCCATATCTGATGATACCATTCATAAAAGACATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATCAAATATTGGCTTCTTCTTCATCACAGAATAGTACTGATTTACTAGACTATCATTTCACAGATTCAGGAAAGCAACAACACAGGTTTGGAAATACTCATCTGTTGCATGAGTTTGTTGTATGA 1776 0.3744 MYPNHSFSSGSYTDMFTTNPPPLPHNYYNESVAGQNEAKFITAMQSIDTHSNTCNSNVDFEQNMQCQELSLSLGTLLPSTASVPPFQYQYQDTGFVSLMNACLPKETTISNDDELKSVECMASISSGGFHDITKRDNFRNADPSDQCLQGSQVFPNILLNSQYLKATQDLLDEIVNVRIRKQRAMEKQEKISDIGLNNSKDNDAKSSAPNDSNSNTSCELSPAERQNLLDKKTQLLSMLDEVDRRYRHYCNQMQIVVSSLDMVAGCGAAEPYTTLALRTISRHFRSLHDAISSQIQVIQRSLGEQEGIPRLRYVDQQLRKQKALQHLGVMRQAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFNDSEMKCNFSSENTLQGKRNYIQQEIDDKSEQESQDNVQIITSDSVQAYSTKEHVEKNVILDYDNERLSVKNGFYSEIACDNATYDLSEFGGGHHQQHNVSLALELRNCESDVLAISDDTIHKRHNNNNNNNNNNNNNNNNNNNNNNQILASSSSQNSTDLLDYHFTDSGKQQHRFGNTHLLHEFVV 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05623 591 CDD homeodomain 334 395 IPR001356 GO:0003677
Trre5g05623 591 Coils Coil 591 591 - -
Trre5g05623 591 MobiDBLite consensus disorder prediction 526 556 - -
Trre5g05623 591 Pfam Associated with HOX 157 292 IPR006563 -
Trre5g05623 591 MobiDBLite consensus disorder prediction 188 221 - -
Trre5g05623 591 MobiDBLite consensus disorder prediction 197 221 - -
Trre5g05623 591 Pfam Homeobox KN domain 351 390 IPR008422 GO:0003677|GO:0006355
Trre5g05623 591 SUPERFAMILY Homeodomain-like 335 400 IPR009057 -
Trre5g05623 591 ProSiteProfiles 'Homeobox' domain profile. 331 394 IPR001356 GO:0003677
Trre5g05623 591 Gene3D - 331 408 - -
Trre5g05623 591 SMART prehox3 152 293 IPR006563 -
Trre5g05623 591 SMART HOX_1 334 398 IPR001356 GO:0003677
Trre5g05623 591 MobiDBLite consensus disorder prediction 530 556 - -
Trre5g05623 591 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 110 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05623 Trre-Chr5 56378474 56380642 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre5g05623 POX 8.4e-47 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05623 5 56378474 56380642 Trre5g05623 5 56378474 56380642 ECH
Trre5g05623 5 56378474 56380642 Trre1g00147 1 1145877 1148464 PCT