Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05622 ATGACTCATCATAATCAATTTGAGAACCAAGAGCTACTAGGTGGTGGTGGTGGTGGTTATGTTACATCTTCATCTTCTTTAAGGAACAACAATAATGCATCATCATATCATGAATCACTTGGAACATTTTCTAACAACATTGAACTAACACAAGGTACTGAAATGAGCCACACAAGACATTTAATGGATCTACTTGGAGCAGCAAATGAGAACAATCACCAAACAAAACATGGTTTATCACTTTCTTTAGGTTCTCATATGCTTGTTGATGAATACAACAGAAACCGTTCCTTAAATCAAGGTCTTATGATCAATCCAAGTTACTTCATGTCTGGTCAAGATCAGACACGTACTGAACCTTGTAATCAATCTGTTGTGGAGAATCTAACTAGTGATTATTTTTACAGTAGTAGTGGTGGAAGTGGAAATGGAAATGGAAATGGAAATGGAAATTTTGGTTCTGGTTCTAATAATAACTCAATGTTGAACCGTTCTACTTCTACTTCTTATGGAGGTGAGAGTTTTGGTTCTGTTATTGGAAACTCTAGATATCTTAAACCAGTACAGTCACTTCTTCAAGATCTTGTTGATGTTGGTGGAAATGTGATTGATAGAATGAATGAAAAGTATGCTGAGAAATTGTTTCATGGAAGTAGAACTGGTGCTAGAACACTCTCCTCTGAGCTCAAAGCAGAGTTAAGGATTCATGGACATTTATTAGCTGATAAACATGAACATCAAGTCAAAATTGCAAAGTTCATTGCTTTGTTGGATGAGGTTGAGAGTAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTATCATCTTTTGAAATGATAGCAGGTTTAGGGGCTGCAAAGTGTTACACTGCTTTGGCACTTCAAGCAATGTCTAGACATTTCTGTAGCTTAAGAGATGCAATAATGTCACAAATAAATGTGGAGAAAAGAAAACTATTTCAAGATGTACCAAAAATCAACAGTGGATTGTCTCAACTGAGCTTATTTGAGAAAGAAAATAATAAACAGAATAGAATGTCTCTTCAACAACTTGGAGTTATTCAAAACCAAAGACAAGTGTGGAGACCCATTAGAGGATTGCCTGAAACTTCTGTAGCTATTCTTCGTGCTTGGTTATTCGAGCATTTTCTTCACCCCTACCCTAATGATTCTGAGAAGTTAATGCTGGCATCCCAAACAGGCTTAACTAAAAACCAAGTATCAAATTGGTTCATAAATGCAAGAGTACGTCTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGAGTCTTCTGAAGATTCCAACCCACCAGCTAACAATTACATGTCAAGGGAAGATGCAACTGATTGTGTGGAAGATTAG 1377 0.3631 MTHHNQFENQELLGGGGGGYVTSSSSLRNNNNASSYHESLGTFSNNIELTQGTEMSHTRHLMDLLGAANENNHQTKHGLSLSLGSHMLVDEYNRNRSLNQGLMINPSYFMSGQDQTRTEPCNQSVVENLTSDYFYSSSGGSGNGNGNGNGNFGSGSNNNSMLNRSTSTSYGGESFGSVIGNSRYLKPVQSLLQDLVDVGGNVIDRMNEKYAEKLFHGSRTGARTLSSELKAELRIHGHLLADKHEHQVKIAKFIALLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIMSQINVEKRKLFQDVPKINSGLSQLSLFEKENNKQNRMSLQQLGVIQNQRQVWRPIRGLPETSVAILRAWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPPANNYMSREDATDCVED 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05622 458 CDD homeodomain 362 423 IPR001356 GO:0003677
Trre5g05622 458 ProSiteProfiles 'Homeobox' domain profile. 381 422 IPR001356 GO:0003677
Trre5g05622 458 MobiDBLite consensus disorder prediction 1 26 - -
Trre5g05622 458 SMART prehox3 173 311 IPR006563 -
Trre5g05622 458 Gene3D - 357 437 - -
Trre5g05622 458 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 439 - -
Trre5g05622 458 MobiDBLite consensus disorder prediction 137 167 - -
Trre5g05622 458 SMART HOX_1 362 426 IPR001356 GO:0003677
Trre5g05622 458 Pfam Associated with HOX 178 310 IPR006563 -
Trre5g05622 458 MobiDBLite consensus disorder prediction 431 458 - -
Trre5g05622 458 SUPERFAMILY Homeodomain-like 368 429 IPR009057 -
Trre5g05622 458 Pfam Homeobox KN domain 379 418 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05622 Trre-Chr5 56370110 56372156 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre5g05622 POX 2.9e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05622 5 56370110 56372156 Trre5g05622 5 56370110 56372156 ECH
Trre1g00147 1 1145877 1148464 Trre5g05622 5 56370110 56372156 PCT