Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05582 ATGGCTTCAAGCTCGAATTGGACAGCAAAGCAGAACAAAAGATTTGAGAATGCATTGGCAATGTTGGAGAAGGATACTCCTGATCGTTGGCAGAAGCTAGCTAGAGCTGTGGGAGGAAAGACTATTGAAGAAGTGAAAAGACATTATGAGATGCTGGTTGAAGATGTGAAGCAGATTGAAGAAGGACATGTTCCTCTGCCTAATTACACAAATAATCTTGGTTACACTTACATAATGGATCAAGATAAAAGGATGAAGGCTCTAAGTCTCCATTGA 276 0.4022 MASSSNWTAKQNKRFENALAMLEKDTPDRWQKLARAVGGKTIEEVKRHYEMLVEDVKQIEEGHVPLPNYTNNLGYTYIMDQDKRMKALSLH 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05582 91 SUPERFAMILY Homeodomain-like 6 60 IPR009057 -
Trre5g05582 91 Gene3D - 1 66 - -
Trre5g05582 91 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 77 IPR044636 GO:0003700
Trre5g05582 91 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Trre5g05582 91 CDD SANT 6 53 IPR001005 -
Trre5g05582 91 FunFam Transcription factor SRM1 1 66 - -
Trre5g05582 91 SMART sant 3 55 IPR001005 -
Trre5g05582 91 Coils Coil 42 62 - -
Trre5g05582 91 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Trre5g05582 91 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05582 Trre-Chr5 56154400 56154821 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g05582 Myb_DNA-binding 4.5e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05582 5 56154400 56154821 Trre5g05582 5 56154400 56154821 ECH
Trre1g00189 1 1389324 1390074 Trre5g05582 5 56154400 56154821 PCT