Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05556 ATGGCGAAATCAAGCGCCGACGATGCCGAACTCCGGCGAGCTTGCGAGGCTGCAATTGAAGGCACAAAGCAGAAGATCGTCATTTCCATCCGAGTCGTCAAGACTCATGGCACCTGGGGAAAAGCTGCCAAGCTTGGTCGTCAAATGGCTAAACCTAGGGTTCTCGCTATCTCTACAAAAGCGAAAACTCAACGGACAAAAGCTTTTCTTCGAGTTTTAAAGTATTCAAATGGAGGAGTTCTTGAGCCTGCTAAGATATACAAGCTGAAGCATCTCTCAAAAGTAGAAGTTGCAACAAATGATCCCAGTGGATGTACATTTACATTGGGATTTGACAACCTTAGGAATCACAGTGTGGCTCCTCCACAGTGGACAATGCGCAATATTGATGACAGGAATCGCCTCCTGCTGTCTATCTTGAATATCTGCAAAGATGTCCTGGGTCGCCTTCCGAAGGTTGTTGGTATTGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACACCTGCAGTTTCCACTCAAAATAACCAAGCAGATGGTGCTACTGTTGAATCTGATGTCAATGAAGCAGAATTGAAAGTCAATGTTGAAAAGGACCTTGTCTCACAAGCAGAGGAAGAGGACATGGAAGCTCTTTTGGGAAATTATATCACGGGTATTAGTCAAGCAGAGGCTTTTTCTGAAAGGTTGAAAAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTGCATGCTATTTTAGAAAGCGAACCTTTGATAGATGAGGTGCTGCAAGGGCTTGAAGCTGCTTCAAATTGCGTGGAAGACATGGATGAATGGTTAGGCATGTTCAATGTGAAACTCCGACACATGAGGGAGGATATTGAATCAATTGAAATCCGCAATAACAAACTGGAAATGCAATCAGTAAATAACAAATCTCTCATTGAAGAGCTTGATAAACTTCTTGAGCAATTGAATATCCCTTCTGAGTATTCAGCATTTTTGACAGGAGAATCATTTGATGAAGCGCAAATGCTTCAAAATATAGAAGCGTGTGAGTGGTTGATTGGTGCCTTGCGTAATTTTGAAGCTTCTAACATAGATCCTACTTATGCAAAGATGAGAGCTTTTAAAGAGAAACGAGGAGAACTTCAAATAATAAAATCTACTTTTGTCAGTAGAGTTTCTGAATTTTTGAGGAATTACTTTGCTACTTTTGTTGATTTCATGATGAATGATAAAAGTTACTTTTCTCAGCGGGGACAGTTGAAAAGGCCAGATCATGCTGACCTGCGATACAAGTGCAGGACATATGCACGCCTTTTGCAACATTTAAAGATTCTTGACAAAAATTGCTTGGGCCCATTGAAAAAGGCTTACTGCTGTTCTCTAAACTTGCTTCTTCGCAGGGAGGTCCGTGAGTTTGCTAATGAACTTCGTGCAGAATCTAAAACTTCCACAGGTTCTGGTCAGAATGTAAATTCTGCTGACTCTTCTACAGTTTCTGATGCATATTCAAAGATGCTCACCGTTTTTATCCCACTTATGGTGGATGAGAGTTCTTTTTTTGCACACTTCATGTGCTTCGAAGCTCCTACACCTGATGGTAATAAATCTGGACACAATGATGAAGCTAACGATGACGATGATTTGGGAATTGCAGACATTGATGAGAATGATACTAAATCCAGTATAAATTCGGCAGAGCTTGCAGGTTTAAATGAATCACTTCAGGATTTGCTTGATGGAATTCAAGAAGACTTCTATGCTGTTGTGGATTGGGCATGTAAGATTGATCCTTTATGCTGCATATCAATGCATGGAATAACGGAACGCTATCTCTCTGGTCAAAAAGCTGATGCATCAAGATTTGTCAGCCTTATGCTTGCTGAACTTGAGTCTCGGATATCTATGCTATTCATTCGTTATGTTGATGATTCTTGCCATAATATTGAAAAGTGTGAGCGCAATGGTCGCCAAAGTGTCCTACCCTATATTCCCAGATTTGCAACCCTTGCAACAAAAATGGAGCAATACATTGCTGGACAGTCTAGGGATTTGGTTGACCAAGCATACACAAAATTTGTTAGCATAATGTTTGTAACTTTGGAAAGACTTGCACAAACAGAGCCAAAGTATGCAGATATTTTCCTTATAGAGAACTATGCTGCTTTTCAAAATAGTTTGTATGACCTAGCCAATGTGGTGCCTACTTTGGCCAAGTTTTATCATCAAGCTAGTGAAGCGTATGAGCAATCATGCTCACGCCATATTAGCATGATTATCTATTATCAATTTGAACGCCTTTTCCAGTTTGCTCGAAGGATTGAGGACTTGATTCTAAATAATGTTGCACCCGAAGAGATTCCTTTCCAGCTTGGGCTGTCAAAAGTGGATTTTCGAAAGATGCTAAAATCCAGTTTGTCTGGGATGGACAGGTCCATTGGTGCAATGTATAAGAAATTGCAGAAGAATTTGACTTCAGAGGAACTGTTACCTTCCTTGTGGGATAAATGCAAGAAGGATTTTGTTGATAAGTATGACAGTTTTGTCCAACTTGTTGCCAAGATTTACCCTGCCGAGTCAGTCCCTTCTACAGCAGAATTGAGAGAGCTTTTAGCCAAGATGTAA 2613 0.408 MAKSSADDAELRRACEAAIEGTKQKIVISIRVVKTHGTWGKAAKLGRQMAKPRVLAISTKAKTQRTKAFLRVLKYSNGGVLEPAKIYKLKHLSKVEVATNDPSGCTFTLGFDNLRNHSVAPPQWTMRNIDDRNRLLLSILNICKDVLGRLPKVVGIDVVEMALWAKENTPAVSTQNNQADGATVESDVNEAELKVNVEKDLVSQAEEEDMEALLGNYITGISQAEAFSERLKRELQALEAANVHAILESEPLIDEVLQGLEAASNCVEDMDEWLGMFNVKLRHMREDIESIEIRNNKLEMQSVNNKSLIEELDKLLEQLNIPSEYSAFLTGESFDEAQMLQNIEACEWLIGALRNFEASNIDPTYAKMRAFKEKRGELQIIKSTFVSRVSEFLRNYFATFVDFMMNDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKILDKNCLGPLKKAYCCSLNLLLRREVREFANELRAESKTSTGSGQNVNSADSSTVSDAYSKMLTVFIPLMVDESSFFAHFMCFEAPTPDGNKSGHNDEANDDDDLGIADIDENDTKSSINSAELAGLNESLQDLLDGIQEDFYAVVDWACKIDPLCCISMHGITERYLSGQKADASRFVSLMLAELESRISMLFIRYVDDSCHNIEKCERNGRQSVLPYIPRFATLATKMEQYIAGQSRDLVDQAYTKFVSIMFVTLERLAQTEPKYADIFLIENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQSCSRHISMIIYYQFERLFQFARRIEDLILNNVAPEEIPFQLGLSKVDFRKMLKSSLSGMDRSIGAMYKKLQKNLTSEELLPSLWDKCKKDFVDKYDSFVQLVAKIYPAESVPSTAELRELLAKM 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05556 870 PANTHER SEC3/SYNTAXIN-RELATED 49 860 - -
Trre5g05556 870 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Trre5g05556 870 Coils Coil 221 248 - -
Trre5g05556 870 Pfam Exocyst complex component Sec3 566 853 IPR019160 GO:0000145|GO:0006887
Trre5g05556 870 Pfam Exocyst complex component Sec3 224 494 IPR019160 GO:0000145|GO:0006887
Trre5g05556 870 Coils Coil 188 208 - -
Trre5g05556 870 Coils Coil 281 318 - -
Trre5g05556 870 MobiDBLite consensus disorder prediction 531 550 - -
Trre5g05556 870 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05556 Trre-Chr5 55960393 55979129 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05556 5 55960393 55979129 Trre5g05556 5 55960393 55979129 ECH
Trre1g00252 1 1813166 1826845 Trre5g05556 5 55960393 55979129 PCT