Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04927 ATGGAAGGAACATTCAATTTCAACGATAATTCATCTTCCGCTTTCAGCGACTGCAACAGTGACGAATCTGGCGAATTCATCACTACATCTACACAAAACCGACGCCTTCTGATTTCATGTGTTTCTGATAATAACTCCGACGAACTCATTCGACGGTTAGTTCTCGATCTTCAATCTTGTTCGATTGATCAACAAAAACAAGCCACAATGGAAATCAGATTACTCGCCAAAAACAAATCAGATAACCGTCTCAGAATCGCGAAAGCCGGCGCTATTAAACCGTTAGTTTCGCTTTTATCTTCACCGGTGATGGACCTTCAGCTACAAGAATACGTTGTCACTGCGATTTTGAATCTCTCGTTATGCGACGAAAATAAAGATGTTATTGCTTCTTCTGGAGCGATTATGGTGAGAGCATTGAAGACAGGTACTCCAACGGCGAAGGAGAATGCGGCGTGTGCTCTGCTTCGTCTCTCGCAGACAGAGGAAAACAAAGCGGTAATCGGAAGATATGGAGGTATTCCGCCATTGGTGAACCTTCTAGAAAACGGAGGTATCCGTGGGATGAAAGACGCGTCGACGGCGCTGTATACGCTTTGTTCGGTGAAGGAGAATAAAATTAGAGCGGTGAAGGCTGGGATAATGAAGCCGTTAGTGGAATTAATGGCGGATTTGGACTCTAACATGGTGGATAAAGCCGCGTATGTGATGAGCGTGTTGGTGACGGTTATGGAGGCAAGAACGGCGTTGGTGGAAGAAGGAGGGATTCCGGTATTGGTGGAAATTGTGGAGATAGGGACGCAGAGACAGAAGGAAATAGCGGTGGTGATATTGTTACAGATTTGTGAAGAGAATATGAGTTATCGGATAATGGTGTGTCGTGAAGGAGCTATTCCTCCGTTGGTTTGTCTTTCTCAGTCCGGTACCGATCGCGCCAAAAGAAAGGTGGAGACACTAATAGAACTTCTACGACAACCAAGATCAAGCAACCCCATTGCACGTGCCTCATAA 1011 0.454 MEGTFNFNDNSSSAFSDCNSDESGEFITTSTQNRRLLISCVSDNNSDELIRRLVLDLQSCSIDQQKQATMEIRLLAKNKSDNRLRIAKAGAIKPLVSLLSSPVMDLQLQEYVVTAILNLSLCDENKDVIASSGAIMVRALKTGTPTAKENAACALLRLSQTEENKAVIGRYGGIPPLVNLLENGGIRGMKDASTALYTLCSVKENKIRAVKAGIMKPLVELMADLDSNMVDKAAYVMSVLVTVMEARTALVEEGGIPVLVEIVEIGTQRQKEIAVVILLQICEENMSYRIMVCREGAIPPLVCLSQSGTDRAKRKVETLIELLRQPRSSNPIARAS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04927 336 SUPERFAMILY ARM repeat 46 325 IPR016024 -
Trre5g04927 336 Pfam Armadillo/beta-catenin-like repeat 80 120 IPR000225 GO:0005515
Trre5g04927 336 Pfam Armadillo/beta-catenin-like repeat 162 201 IPR000225 GO:0005515
Trre5g04927 336 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g04927 336 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 90 134 IPR000225 GO:0005515
Trre5g04927 336 FunFam RING-type E3 ubiquitin transferase 38 329 - -
Trre5g04927 336 Gene3D - 190 325 IPR011989 -
Trre5g04927 336 Gene3D - 27 189 IPR011989 -
Trre5g04927 336 SMART arm_5 285 325 IPR000225 GO:0005515
Trre5g04927 336 SMART arm_5 243 283 IPR000225 GO:0005515
Trre5g04927 336 SMART arm_5 122 160 IPR000225 GO:0005515
Trre5g04927 336 SMART arm_5 79 121 IPR000225 GO:0005515
Trre5g04927 336 SMART arm_5 161 201 IPR000225 GO:0005515
Trre5g04927 336 SMART arm_5 202 242 IPR000225 GO:0005515
Trre5g04927 336 PANTHER U BOX DOMAIN-CONTAINING 50 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04927 Trre-Chr5 50939764 50942670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04927 50 330 U-box Gene Family AT2G23140 49.470 8.10e-79 251
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00404 1 2872163 2874055 Trre5g04927 5 50939764 50942670 PCT