Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04922 ATGGCTATGGAAGCGCTTAATTCTCCCACCACCGCCACTCCTTTCACTCCTTTCCAGGAACCAAATCACGACTACATCGATGCACCTTGGACTAAAGGTAAACGTTCAAAACGTTCTCGTATGGATCAATCTTCTTGTACTGAGGAAGAGTATCTCGCTCTTTGTCTCATCATGCTCGCTCGCGGTGGAAACGGCAACCACAACAACAAAATTACTCTCTCCACCGCCGTCAAACCTGCTTTATCTGATACTGAATCAGCGCCGTTAACCGCCGCAGCAGCTAAACTCAGTCACAAATGCTCTGTTTGCAACAAAGCTTTTTCATCTTACCAAGCACTCGGTGGACACAAAGCTAGTCACCGGAAGCTTGCTGTTATGTCAACTGCTGAAGATCAGACTACTACAACCTCATCCGCCGTGACTACCAGCTCTGCTGCATCCAACGGTAAGATCAAGTCTCATGAGTGTTCCATCTGTCATAAATCCTTTCCTACTGGACAGGCTTTAGGAGGACACAAGCGTTGTCACTATGAAGGTGGTGGAAACAGCAGCGCTGTAACTGCATCTGAAGTTGCATCTTCTCACAGTCAGCACCGTGATTTTGATCTTAACCTCCCAGCTTTTCCGGACTTTTCAAAGAAGTTTTTCGTGGATGACGAGGTTTCCAGCCCTCACCCTGCAGCCAAGAAGCCCTGTCTTTTCAAGATTGAAATCCCTCAATACTGA 726 0.4725 MAMEALNSPTTATPFTPFQEPNHDYIDAPWTKGKRSKRSRMDQSSCTEEEYLALCLIMLARGGNGNHNNKITLSTAVKPALSDTESAPLTAAAAKLSHKCSVCNKAFSSYQALGGHKASHRKLAVMSTAEDQTTTTSSAVTTSSAASNGKIKSHECSICHKSFPTGQALGGHKRCHYEGGGNSSAVTASEVASSHSQHRDFDLNLPAFPDFSKKFFVDDEVSSPHPAAKKPCLFKIEIPQY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04922 241 MobiDBLite consensus disorder prediction 27 43 - -
Trre5g04922 241 Gene3D Classic Zinc Finger 96 176 - -
Trre5g04922 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 176 IPR013087 -
Trre5g04922 241 MobiDBLite consensus disorder prediction 1 43 - -
Trre5g04922 241 SMART c2h2final6 98 120 IPR013087 -
Trre5g04922 241 SMART c2h2final6 154 176 IPR013087 -
Trre5g04922 241 MobiDBLite consensus disorder prediction 1 18 - -
Trre5g04922 241 SUPERFAMILY beta-beta-alpha zinc fingers 98 176 IPR036236 -
Trre5g04922 241 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Trre5g04922 241 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Trre5g04922 241 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 207 IPR044653 GO:0003700
Trre5g04922 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 120 IPR013087 -
Trre5g04922 241 Pfam C2H2-type zinc finger 98 122 - -
Trre5g04922 241 Pfam C2H2-type zinc finger 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04922 Trre-Chr5 50909347 50910072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04922 1 238 C2H2 Transcription Factor Family AT1G27730 48.594 1.70e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g04922 zf-C2H2_6 2.7e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04922 5 50909347 50910072 Trre5g04922 5 50909347 50910072 ECH
Trre1g00395 1 2814531 2815202 Trre5g04922 5 50909347 50910072 PCT