Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04865 ATGTTTGATTATCGAATTCCAATAGAAAAGTGTGCCGGACTAGAGAGTCCGGTGAAAATGAATGGTCTGCCAATAAGTGTTTATGCACCGGAGACCGTTGGATGTGTAGTTGTGGACAGCGAAGGAAGATGTGCTGCTGCTACATCAACCGGTGGACTAATGAACAAAATGAGTGGTCGAATCGGTGATTCACCACTCATTGGTGCTGGAACATATGCATGTGAAGTGTGTGGAGTTTCTTGCACCGGCGAAGGTGAAGCAATCATTCGCGGTACTCTTGCGCGCGAAGTGGCAGCAGTTATGGAGTACAAAGGTTTGGGCCTTCAAGAGGCTGTGGACTTTGTTATCAAACATCGTCTTGATGAAGGGTTTGCTGGTCTTATTGCTGTCTCTAATAAGGGTGAAGTGGCTTATGGGTTTAATTGTAATGGAATGTTTAGGGGTTGTGCTACTGAGAATGGGTTCATGGAGGTGGGAATTTGGGAATGA 489 0.4581 MFDYRIPIEKCAGLESPVKMNGLPISVYAPETVGCVVVDSEGRCAAATSTGGLMNKMSGRIGDSPLIGAGTYACEVCGVSCTGEGEAIIRGTLAREVAAVMEYKGLGLQEAVDFVIKHRLDEGFAGLIAVSNKGEVAYGFNCNGMFRGCATENGFMEVGIWE 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04865 162 FunFam Isoaspartyl peptidase/L-asparaginase 32 162 - -
Trre5g04865 162 Gene3D (Glycosyl)asparaginase 32 162 - -
Trre5g04865 162 Pfam Asparaginase 30 161 IPR000246 GO:0016787
Trre5g04865 162 PANTHER L-ASPARAGINASE 29 149 IPR000246 GO:0016787
Trre5g04865 162 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 30 159 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04865 Trre-Chr5 50500026 50500609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04865 31 122 Miscellaneous Gene Families AT4G00590 31.000 6.00e-07 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04865 5 50500026 50500609 Trre5g04865 5 50500026 50500609 ECH
Trre1g00375 1 2681774 2684121 Trre5g04865 5 50500026 50500609 PCT