Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04438 ATGTCTGGTCGGAATGAACATGTTCCTCTTTCGGTGCTGTTGAAGCGTGAATTGGCGAATGAGAAAGTTGACAAATCTGATATGGTTGTTGTGTATAGCCAAGCTAGCGAGAATAAGAAAGGAGAAGATTTTACGTTGTTGAAGACTGAATGTCAAAGAGTTGTGGCTGATGGGGTTTCTACATATTCTGTTTTTGGGCTATTTGATGGACACAATGGATCTGCTGCTGCAATTTATGCCAGGGAGAATCTTCTGAACAATGTTTTAAATGCCATTCCTCCAGATCTCAATAGAGATGAGTGGGTAACAGCGTTGCCGAGGGCTTTGGTTGGTGGCTTTGTAAAAACTGATAAAGATTTTCAACAGAAAGCACAATCATCAGGAACAACTGTAACCCTTGTGATTTTAGAAGGATGGGTTATAACAGTTGCATCAGTTGGTGATTCCCGGTGCATACTTGAACCTTCTGAAGGTGGGCTTCATTACTTGTCAGCAGATCATCGACTAGACACAAATGAAGAGGAGAGGGTGCGTATCACTTCTTGTGGGGGTGAAGTTGGTCGATTAAATACAGGCGGAGGTGCAGAGGTTGGTCCGTTGAGATGTTGGCCCGGTGGCTTGTGTCTCTCTCGATCCATTGGTGATATGGATGTTGGCGAATTTATTGTCCCTGTACCACACGTAAAGCAAGTGAAGCTTTCCACTTCTGGAGGAAGGCTTATCATTAGTAGTGATGGGGTCTGGGATGCTCTAACTGCAGAAATGGTCCTTGATTGTTGTCGTGGCATGTCAGCGGAGGCTGCAGCACCACATATTGTAAAAGAATCTTTGCATGCAAAGGGACTTAGAGATGACACAACCTGCATTGTGGTCGATATTTTACCCCAGGAGAAGCCACCTACTTCTCTACCAACACAAAAGAGACCGGTAAAAGGAATGTTGAAGGCCATTTTTCGCAAAAAGTCCTCTGAGCCATCTTCATATATTGTAAGAGAATACGTTGAGCCAGATATGGTACGGGAATTACACGAGGAAGGATCTGCTATGCTTTCAGAGAGGTTTGAAACAAAATTTCCACTTTGCAACATGTTCAAGTTGTTCCAGTGTGCAGTGTGTCAAGTAGAGATTAAACCTGGGGAGGGTATTTCAGTACATGAGGGTGCCCCTAACCAAGGGAAAGCGCGCCCCTGGGATGGACCTTTCCTTTGCTCAAGTTGCCACGAGAAGAAACAAGCCATGGAAGGGAGACGAACATCAGATAGACATAGCCGTCGAAGTGACTAA 1284 0.447 MSGRNEHVPLSVLLKRELANEKVDKSDMVVVYSQASENKKGEDFTLLKTECQRVVADGVSTYSVFGLFDGHNGSAAAIYARENLLNNVLNAIPPDLNRDEWVTALPRALVGGFVKTDKDFQQKAQSSGTTVTLVILEGWVITVASVGDSRCILEPSEGGLHYLSADHRLDTNEEERVRITSCGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTSGGRLIISSDGVWDALTAEMVLDCCRGMSAEAAAPHIVKESLHAKGLRDDTTCIVVDILPQEKPPTSLPTQKRPVKGMLKAIFRKKSSEPSSYIVREYVEPDMVRELHEEGSAMLSERFETKFPLCNMFKLFQCAVCQVEIKPGEGISVHEGAPNQGKARPWDGPFLCSSCHEKKQAMEGRRTSDRHSRRSD 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04438 427 CDD PP2Cc 31 293 IPR001932 -
Trre5g04438 427 SMART PP2C_4 17 291 IPR001932 -
Trre5g04438 427 Gene3D - 21 299 IPR036457 -
Trre5g04438 427 ProSiteProfiles PPM-type phosphatase domain profile. 32 293 IPR001932 -
Trre5g04438 427 PANTHER PROTEIN PHOSPHATASE 42 292 IPR015655 GO:0004722|GO:0006470
Trre5g04438 427 FunFam probable protein phosphatase 2C 12 32 299 - -
Trre5g04438 427 Pfam Protein phosphatase 2C 57 281 IPR001932 -
Trre5g04438 427 MobiDBLite consensus disorder prediction 409 427 - -
Trre5g04438 427 SUPERFAMILY PP2C-like 30 293 IPR036457 -
Trre5g04438 427 MobiDBLite consensus disorder prediction 408 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04438 Trre-Chr5 46472306 46476348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04438 1 427 PP2C-type Phosphatase Gene Family AT1G47380 73.256 0.0 667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04438 5 46472306 46476348 Trre5g04438 5 46472306 46476348 ECH
Trre1g00311 1 2224626 2228810 Trre5g04438 5 46472306 46476348 PCT