Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03766 ATGTTCCAACAAAGACATAACAATATTAATACTAGCGAGCTAGATCAAATGTTGCATATGCTAACTTCTAATTCTATTCCAATGCCATTTCCAACAACCTCAATGGACAAATCAAATTCAAAGTGGAAACCAAACATTGAAATTGCTCCAAATTGTCCTCGTTGTGCTTCAACTCACACAAAATTTTGTTACTACAACAATTATAGCCTCTCACAGCCAAGATATTTTTGCAAAGGTTGTAGACGCTATTGGACTAAAGGTGGCTCTCTTCGAAATGTTCCCGTTGGTGGTGGTTGCCGTAAAACCCGTCGCGGAAAAGCGGTTAGAAGTTCTCATAATTCTGACCGCCTTTCCGCGAATGGTTCTGTTGATGATGGAGATGGTCATCATCAACAGAATCAAAATAACGGGTCGCGTGATATAGATATGGCGGTTGTTTTCGCCAATTTCTTAAACCAAAATCCAAATAGTATTACTACTACTACTACTCCGCCTCATCATCATGGTGATGAGGAATTAGAAATTGAGAGTGAGCCTAACAATAATAATGGCTTGTGTTCTTCTTCAAACAATGGTAACAATTTGTCGACACCGGATAGTGTCGAAACAGAGAATGATGCAGTGGTTCAGAGTGAGAATCCTTTTGATCAAGAATTGAGTTTGAGTGGAATTGAATATGATCAATTTGAAGGATTATTAGGTGTTGATGAAGATGTGGTACAAGATGTTCTATGGTCAGAATCTGATGCTATGAATATGATGGTGTCATGTTCAAATAATTATACATGGCAACAACCATCTACCATGATGCAAATGGAATTGGAGTATTCAATGCCATTGAATGAAAATTGTGGTATTCATCATGATCAATTATTACCTGTTAATGTTAATTCAAATTCTACTAATGTCAATTTGATTAGTGATCAAAGTTGGATTAGTAATTCTTGGGATTCTTTTGATCTTTCAACTATGGAAGTCTTCTCATCAAGTTCAAGACCTTAA 1002 0.3653 MFQQRHNNINTSELDQMLHMLTSNSIPMPFPTTSMDKSNSKWKPNIEIAPNCPRCASTHTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKTRRGKAVRSSHNSDRLSANGSVDDGDGHHQQNQNNGSRDIDMAVVFANFLNQNPNSITTTTTPPHHHGDEELEIESEPNNNNGLCSSSNNGNNLSTPDSVETENDAVVQSENPFDQELSLSGIEYDQFEGLLGVDEDVVQDVLWSESDAMNMMVSCSNNYTWQQPSTMMQMELEYSMPLNENCGIHHDQLLPVNVNSNSTNVNLISDQSWISNSWDSFDLSTMEVFSSSSRP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03766 333 MobiDBLite consensus disorder prediction 178 214 - -
Trre5g03766 333 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Trre5g03766 333 Pfam Dof domain, zinc finger 50 103 IPR003851 GO:0003677|GO:0006355
Trre5g03766 333 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Trre5g03766 333 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 199 IPR045174 GO:0003700|GO:0006355
Trre5g03766 333 MobiDBLite consensus disorder prediction 112 138 - -
Trre5g03766 333 MobiDBLite consensus disorder prediction 154 214 - -
Trre5g03766 333 MobiDBLite consensus disorder prediction 95 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03766 Trre-Chr5 37710009 37711010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03766 42 156 C2C2-Dof Transcription Factor Family AT3G52440 59.664 1.61e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre5g03766 zf-Dof 5.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03766 - - mtr:11416134 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03766 5 37710009 37711010 Trre5g03766 5 37710009 37711010 ECH