Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02695 ATGGAATCATCTGCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCAGGAATGGATTCATCTTCACCATTATCTGGTGACATGCTAACATGTTCAAGACCATCATCAATGATAGATCAAAGGAGATTAAGACCACCACATGACCTATCTCTAAAATGTCCAAGATGTGATTCAACTCACACCAAATTCTGCTACTATAACAACTACAGTCTCTCTCAGCCAAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACCAAAGGTGGAACTCTTAGAAACATTCCTGTTGGTGGAGGTTGTAGAAAAAACAAGAAAGTTTCTAACAAAAAATCAAATGATATTAATCACCATTTAGCTTCTAATAATAATAATATTCAAAACCAACCACATCATGTTCCTTCTTATCATCAAAACCCTAAAGATCTTCAACTTTCTTTCCCTGATGTTCAATTTTCTCACTTAAGTAACTTACTTGGAACTAATGGAGCATTAGGAAACCCTAATTTCATGCTTGAGAGTAAGTATAGTAATGTTGGTATGCTTGAGAATCCTAGACCTATTGATTTTATGATGGAAAGTAAGTTAGAGGGTATAATTGGAAGTAGCTCTAGGAATTTTGATAATTATTTTGGAAATGGTGATCATATGAGTATGAATATGGGAGTTGGGATTGGAGGTGATATGATGAATGGTAATCAAAATGGTTTGTCACAAAATTTTCATCATGCATTTGGTGGCATGTCATTTGATGGAGGAAACAATAACAATAACAATAACAATGGTGCTTATTTAATGGATTCTTGTCAAAGACTTATGCTTCCATATGATGCTAATGATCATGAGGATCATAATGATGGATCAATTGATGTGAAACCAAACCCTAAATTATTGTCAATTGAATGGCAACAAGATCAAGGTTGCTCTGATGTTGGAAAAGAGTCATTTGGATATGGATCATGGAGTGGTAGTATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTGA 1023 0.3548 MESSADHWLQGTIHEESGMDSSSPLSGDMLTCSRPSSMIDQRRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSNKKSNDINHHLASNNNNIQNQPHHVPSYHQNPKDLQLSFPDVQFSHLSNLLGTNGALGNPNFMLESKYSNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNYFGNGDHMSMNMGVGIGGDMMNGNQNGLSQNFHHAFGGMSFDGGNNNNNNNNGAYLMDSCQRLMLPYDANDHEDHNDGSIDVKPNPKLLSIEWQQDQGCSDVGKESFGYGSWSGSMMNGYGSSTTNPLING 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02695 340 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Trre5g02695 340 Pfam Dof domain, zinc finger 51 106 IPR003851 GO:0003677|GO:0006355
Trre5g02695 340 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Trre5g02695 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 230 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02695 Trre-Chr5 21352458 21354150 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02695 8 338 C2C2-Dof Transcription Factor Family AT5G62940 41.818 2.81e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre5g02695 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02695 - - gmx:100806697 454.907