Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02694 ATGGGTTTGTCTTCTCTTCACGTCTGTAATATGGAATCATCTGCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCAGGAATGGATTCATCTTCACCATTATCTGGTGACATGCTAACATGTTCAAGACCATCATCAATGATAGATCAAAGGAGATTAAGACCACCACATGACCTATCTCTAAAATGTCCAAGATGTGATTCAACTCACACCAAATTCTGCTACTATAACAACTACAGTCTCTCTCAGCCAAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACCAAAGGTGGAACTCTTAGAAACATTCCTGTTGGTGGAGGTTGTAGAAAAAACAAGAAAGTTTCTAACAAAAAATCAAATGATATTAATCACCATTTAGCTTCTAATAATAATAATATTCAAAACCAACCACATCATGTTCCTTCTTATCATCAAAACCCTAAAGATCTTCAACTTTCTTTCCCTGATGTTCAATTTTCTCACTTAAGTAACTTACTTGGAACTAATGGAGCATTAGGAAACCCTAATTTCATGCTTGAGAGTAAGTATAGTAATGTTGGTATGCTTGAGAATCCTAGACCTATTGATTTTATGATGGAAAGTAAGTTAGAGGGTATAATTGGAAGTAGCTCTAGGAATTTTGATAATTATTTTGGAAATGGTGATCATATGAGTATGAATATGGGAGTTGGGATTGGAGGTGATATGATGAATGGTAATCAAAATGGTTTGTCACAAAATTTTCATCATGCATTTGGTGGCATGTCATTTGATGGAGGAAACAATAACAATAACAATAACAATGGTGCTTATTTAATGGATTCTTGTCAAAGACTTATGCTTCCATATGATGCTAATGATCATGAGGATCATAATGATGGATCAATTGATGTGAAACCAAACCCTAAATTATTGTCAATTGAATGGCAACAAGATCAAGGTTGCTCTGATGTTGGAAAAGAGTCATTTGGATATGGATCATGGAGTGGTAGTATGATGAATGGTTATGGATCTTCCACAACAAACCCTTTGATCAACGGCTGA 1053 0.3561 MGLSSLHVCNMESSADHWLQGTIHEESGMDSSSPLSGDMLTCSRPSSMIDQRRLRPPHDLSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSNKKSNDINHHLASNNNNIQNQPHHVPSYHQNPKDLQLSFPDVQFSHLSNLLGTNGALGNPNFMLESKYSNVGMLENPRPIDFMMESKLEGIIGSSSRNFDNYFGNGDHMSMNMGVGIGGDMMNGNQNGLSQNFHHAFGGMSFDGGNNNNNNNNGAYLMDSCQRLMLPYDANDHEDHNDGSIDVKPNPKLLSIEWQQDQGCSDVGKESFGYGSWSGSMMNGYGSSTTNPLING 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02694 350 ProSitePatterns Zinc finger Dof-type signature. 64 100 IPR003851 GO:0003677|GO:0006355
Trre5g02694 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 239 IPR045174 GO:0003700|GO:0006355
Trre5g02694 350 ProSiteProfiles Zinc finger Dof-type profile. 62 116 IPR003851 GO:0003677|GO:0006355
Trre5g02694 350 Pfam Dof domain, zinc finger 61 116 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02694 Trre-Chr5 21352428 21354150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02694 1 348 C2C2-Dof Transcription Factor Family AT5G62940 42.289 2.95e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre5g02694 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02694 - - gmx:100806697 468.003