Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01694 ATGATTGAAACTAAAGATCCTGCAATTAAGCTATTTGGTAAGAAGATTCTCTTTCATGGAGAAGTTGAAGCTTTTATTATTGACGGCGACGGAAATATTTCGCCGCCGGCTATGGTTGTAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGAGATTTTGGTAAATCTGAAAATGAAGAAGAAGAAGAAGAAGAAAAAATAGAGAAGGATCATGGAGCAGAAAATGATACTGAGAAAAAGAAAGAGGCTGATCCTTCTCCTAATTCTCCTAATTCTGCAGACATCAAGAACAACAACAATTCAGCACCAACAACTACTGAGCCAATTCAAAATCCAAAAACACCTTCAATAGATGAAGAAACATCAAAATCTGAAAACGAACAAAGCGACGCAGCAACAACAAACCCTAAAACACTAAAGAAACCCGACAAATTACTTCCGTGTCCACGCTGCAATAGCATGGACACGAAATTTTGTTACTACAACAACTACAACATCAATCAGCCGCGCTATTTCTGCAAGGCATGTCAAAGATATTGGACCGCGGGTGGAACAATGAGGAATGTTCCGGTCGGTGCTGGGAGAAGAAAAAGCAAGAGCAATACTTCGTCACATTATCGCCACATCACCATCTCTGAGGCTCTTGATGCAGCAAGAATCATTTCCCCGAACGGAACTCATCACCTTCAAAATTTTAAAACCAATGGTAGAGTCCTAAGCTTTGGATTGGATCATCCACAAATTTGTGATTCAATGTCAAAAGTTTTCAATCCTGCAGAGAAAAAGAGTCTTAACAACACTCGAACTAATGGCGATCGCGACCAGTGCTCGAGCGCGTCTTCTATTACACTTTCAAAATCTATAGAGGAAAGTGGCAAAAACATGTCACAAGAATCATTACCACAACAAAATAATGGTTTCATTCCTCAAGTTCCATGTATGACTAATGTTCCTTGGCCTTATCCTTGGAGTACCGGCGCAATTCCCTCCCCGCAAACTTTGTATCCTCCGGGATTTCCCATGTCATTTTACCCTAATCCTTTTTGGAATTGCGGTGTTCCGGGGAATTGGAATGTTCCTTGGTTTACATCTCATACATCCGCGACAACAACTCGTACGTCTCCGAACTCTAGTCCGAAATCTCCAACACTCGGGAAGCACTCGAGGGATGAAGACAACAACATAGATAAACAAGACAATTTGCAAAAAGAGGAATCACCAAAACAAAGAAATGGGTGTGTTTTGGTTCCAAAAACATTGAGAATGGATGATCCAAATGAAGCTGCAAAGAGTTCAATATGGGAAACACTTGGAATTAAGAATGAAGGTATTAGTAGGGGAGGTATGATTAAAGCATTTCAATCAAAGAATGATGGTAAAAAACATCATGTTCAAACCTCTCCAATGTTGTTGGCTAACCCTGCAGCTTTGGCTAGATCACTTAATTTCCATGAGAATTCTTAA 1461 0.4004 MIETKDPAIKLFGKKILFHGEVEAFIIDGDGNISPPAMVVEEEEEEEEERDFGKSENEEEEEEEKIEKDHGAENDTEKKKEADPSPNSPNSADIKNNNNSAPTTTEPIQNPKTPSIDEETSKSENEQSDAATTNPKTLKKPDKLLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKSKSNTSSHYRHITISEALDAARIISPNGTHHLQNFKTNGRVLSFGLDHPQICDSMSKVFNPAEKKSLNNTRTNGDRDQCSSASSITLSKSIEESGKNMSQESLPQQNNGFIPQVPCMTNVPWPYPWSTGAIPSPQTLYPPGFPMSFYPNPFWNCGVPGNWNVPWFTSHTSATTTRTSPNSSPKSPTLGKHSRDEDNNIDKQDNLQKEESPKQRNGCVLVPKTLRMDDPNEAAKSSIWETLGIKNEGISRGGMIKAFQSKNDGKKHHVQTSPMLLANPAALARSLNFHENS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01694 486 PANTHER CYCLIC DOF FACTOR 2 4 486 IPR045174 GO:0003700|GO:0006355
Trre5g01694 486 MobiDBLite consensus disorder prediction 85 116 - -
Trre5g01694 486 MobiDBLite consensus disorder prediction 366 393 - -
Trre5g01694 486 MobiDBLite consensus disorder prediction 260 279 - -
Trre5g01694 486 ProSitePatterns Zinc finger Dof-type signature. 147 183 IPR003851 GO:0003677|GO:0006355
Trre5g01694 486 Coils Coil 43 65 - -
Trre5g01694 486 MobiDBLite consensus disorder prediction 28 145 - -
Trre5g01694 486 ProSiteProfiles Zinc finger Dof-type profile. 145 199 IPR003851 GO:0003677|GO:0006355
Trre5g01694 486 MobiDBLite consensus disorder prediction 67 84 - -
Trre5g01694 486 MobiDBLite consensus disorder prediction 39 66 - -
Trre5g01694 486 MobiDBLite consensus disorder prediction 366 382 - -
Trre5g01694 486 Pfam Dof domain, zinc finger 143 199 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01694 Trre-Chr5 12356096 12358808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01694 1 484 C2C2-Dof Transcription Factor Family AT3G47500 44.576 6.67e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre5g01694 zf-Dof 2.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01694 - - gsj:114409713 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g02213 7 17639978 17642483 Trre5g01694 5 12356096 12358808 ECH
Trre5g01694 5 12356096 12358808 Trre5g01694 5 12356096 12358808 ECH