Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00208 ATGGAAGAAGTGTTAGGTCAAAACTCAGTTCCTCCTCCCGGTTCCATTGACAAGTCTAAGATTCTGGATATTAAGCCAATAAGAAGTTTGATTCCCGTTTTTTCAATGAATCCTCAAGCTCCGCCTTCAGGACAGTATCCTTCTGGGTTTTCCCCATTTTTCCCCTTTGGCGGACCTCATGACACTTCAACCACTGGGGTGAAACGTAGAGCGATGCCGACTCCGCTTCGAGCATTTAGGAGTCCTGTAGGAGAGGACGAGGATGTCAATTACAATGATGATTTTAGTAACACAAGAAATGCAGCATCGCATTCGAGCCGGGTCAAACCGAAGAAGACCAAGATATATAGTGATTTGCATGTTGATTTGAGTGGTTTAGTTGGTATAAACCCGGCACATAGAGACGATGGGAACCGTGAAGTGGTTAGTATTGTACTCATGACATTTGATGCACTAAGAAGAAGGCTAAGCCAACTTGTAGATGCCAAGGAATTGAGCACGGGTTTGGTCAAGCGTGCGGATTTAAAAGTTGGCAATATTTGTATGACCAAAGGAATTCGAACAAACGTGACGAAGAGGATCGGAGCAGTGCCTGGAATTGAGATTGGGGACATTTTCTTTTTCCGAATGGAATTGTGTGTTGTTGGTTTGCACGCTCAGTCCATGGGGGGAATTGATGCCTTGCATATCACGGGTGTCCGCGAGGAAGAAACTTTGGCTGTAAGCATTGTTTCTTCAGGAGAATATGACGATGAAGCTGAGGATGGTGATGTTATAATTTATACCGGTCAGGGTGGGAATTTCAACAAGAAAGAAAAGCATGTGTCAGATCAGAAGCTTCATAGGGGCAATCTTGCTTTGGATAGAAGTTCACGAACACACAATGAAATAAGAGTCATCCGAGGCATTAAAGATGCTGTGAATCCAAACTCAAAAATATACGTCTATGATGGTCTATATAAAATTCAAGATTCATGGGTTGAAAAAGCCAAAGGCGGTGGTAGCTTGCTTAAGTATAAGTTGATAAGAGTGCCTGGACAGCCTAGTGCCTTTGCTGTTTGGCATTCCATTCAGAAGTGGAAATCTGGCTCTGCAAGGACTGGACTTATTCTTGCAGACCTCTCCTCAGGAGCCGAGAGTATTCCTGTATCGCTTGTCAATGAAGTCGATAACGTGAAGTCACCTGCCTTTTTCACATACTTTCACTCTCTTCGACATCCAAAATCATTCAGTTTAATGCAGCCTTCACATGGTTGCAGCTGTAATGCTAAAAAAGCATGTGTCCCTGGTGATTTGGATTGCTCTTGCATTAGGAGAAATGACGGTGATTTTCCATATATTACCAATGGTGTTCTGGTGAGTCGTAAGCCGTTGGTTCATGAATGTGGCCCTACATGTCAATGTTTTCCTAACTGCAAAAATCGAGTATCCCAAACCGGTTTAAAGCACCAAATGGAAGTGTTCAAAACAAGTAATAAAGGTTGGGGTCTTCGATCATGGGATCCTATTCGTGCTGGTGCTTTTATTTGCGAGTATGCAGGAGAAGTTATCGATAAAGCTAGGTTAAGTCAGCTTGTAAAAGAAGGAGATACTGACGAGTATGTTTTCGATACAACTCGTATTTATGAATCTTTCAAGTGGAATTATGAGCCTAAGATACTGGAAGAAGTGAGCACAAATGAGTCTAGCGAGGACTATGCTCTGCCACATCCTCTTATTATAAATGCTAAGAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCTGTCATGTATGAAGAGAACAACCAATCCTTTCTCCATGTTGCATTTTTTGCATTGAGACATATTCCTCCAATGCAAGAGTTAACATATGACTATGGATCTGAACGATCTGATAATGCTGAGGGTAGCAGTGCAAACAAAGGCAGAAAGAAATGCTTATGTGGATCACCAAAATGCCGCGGTTCTTTTACTTGA 1986 0.423 MEEVLGQNSVPPPGSIDKSKILDIKPIRSLIPVFSMNPQAPPSGQYPSGFSPFFPFGGPHDTSTTGVKRRAMPTPLRAFRSPVGEDEDVNYNDDFSNTRNAASHSSRVKPKKTKIYSDLHVDLSGLVGINPAHRDDGNREVVSIVLMTFDALRRRLSQLVDAKELSTGLVKRADLKVGNICMTKGIRTNVTKRIGAVPGIEIGDIFFFRMELCVVGLHAQSMGGIDALHITGVREEETLAVSIVSSGEYDDEAEDGDVIIYTGQGGNFNKKEKHVSDQKLHRGNLALDRSSRTHNEIRVIRGIKDAVNPNSKIYVYDGLYKIQDSWVEKAKGGGSLLKYKLIRVPGQPSAFAVWHSIQKWKSGSARTGLILADLSSGAESIPVSLVNEVDNVKSPAFFTYFHSLRHPKSFSLMQPSHGCSCNAKKACVPGDLDCSCIRRNDGDFPYITNGVLVSRKPLVHECGPTCQCFPNCKNRVSQTGLKHQMEVFKTSNKGWGLRSWDPIRAGAFICEYAGEVIDKARLSQLVKEGDTDEYVFDTTRIYESFKWNYEPKILEEVSTNESSEDYALPHPLIINAKNVGNVARFMNHSCSPNVFWQPVMYEENNQSFLHVAFFALRHIPPMQELTYDYGSERSDNAEGSSANKGRKKCLCGSPKCRGSFT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00208 661 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 178 362 - -
Trre5g00208 661 ProSiteProfiles SET domain profile. 483 630 IPR001214 GO:0005515
Trre5g00208 661 Pfam Pre-SET motif 375 475 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre5g00208 661 Pfam SAD/SRA domain 194 347 IPR003105 -
Trre5g00208 661 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 63 661 IPR025794 GO:0016571
Trre5g00208 661 Gene3D SET domain 364 660 IPR046341 -
Trre5g00208 661 ProSiteProfiles Pre-SET domain profile. 417 480 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre5g00208 661 ProSiteProfiles YDG domain profile. 195 343 IPR003105 -
Trre5g00208 661 ProSiteProfiles Post-SET domain profile. 645 661 IPR003616 -
Trre5g00208 661 SMART G9a_1 190 347 IPR003105 -
Trre5g00208 661 SUPERFAMILY SET domain 380 658 IPR046341 -
Trre5g00208 661 Gene3D - 177 363 IPR036987 -
Trre5g00208 661 SMART set_7 483 636 IPR001214 GO:0005515
Trre5g00208 661 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 97 654 - -
Trre5g00208 661 SMART preset_2 371 467 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre5g00208 661 Pfam SET domain 494 630 IPR001214 GO:0005515
Trre5g00208 661 SUPERFAMILY PUA domain-like 177 363 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00208 Trre-Chr5 1264364 1266349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00208 1 660 Su(var)3-9 homologs AT1G73100 51.906 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre5g00208 SAD_SRA 2e-47 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00208 5 1264364 1266349 Trre15g01579 15 12670369 12675139 PCT