Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03542 ATGAATAGTGAAGGTGACATGAGTGTTAAAGATCATTCTACTATCATGCTCTTTGGTAAGAAGATTCCGGTGCCGGAATATCATACTCCGGCGACATCTCAAAAGGGTTGTCAGATTCAGGCCAAGTCTACAATCATGAATGCTTGCAATAACTCGAAACAAACAAGAATTGAAATGCCTCGTACTCAAAACATTGAGATACCAAAGAATTCTTCTAAAGAAGAAAATGAATCGAAAGTTACTACAAGCACAGTGGAAGATACTATGGAAACTAGCAGCACCGATCAAGACAAAGTCCTAAAGAAACCAGACAAGATTGTTCAATGTCCAAGATGCAACAGTTTCGACACGAAATTTTGTTATTTCAACAACTACAATGTCAATCAACCTCGGCATTTCTGTCGCAACTGTCATAGATATTGGACTGCAGGTGGAACAATGAGAAACGTTGCTGTCGGTGCAGGGAGACGGAAGAACAAACACATTGGTTCGCAGTATCGTCAAATGATTGTAGCGTCCGGTGGAACTCCGGCCGCAAATTTAGAAGCCAATGACTCTCTCCAACATGATAATGGTATTGTCTTAAAATTCGGTCTAGATGTTGATGCAAGTGCTAACAATGGTACGGAAAATCGAGAAGAATCATCATCATTATGTGTATCTTCTGTGACAAACGGTTATACTCGAGGAACCGAGTTATCCGAAACCGAACAAAATAGGTCAAACACTTTGCAGAGTTACCCTGCATTTTCATGGATAGTTCCAATGAACCAAAGTTGGAACAATGTTACTTCCATGGTTCAATCTTCTATGCAAATGTATCCTACTACAATGCAGTGGTGTCACGCGCCGATGGTTGCGGTTACAAACATTTTCACACCGAGCATTGGCTTGCAATTTGTTCCTAGTTCATATGGAAATGGAAATGTTTCAATTGGTTCAAATGGTTGCATTTCACCTTCTTCATCTACTACTAGTAACAGTTTATGTTCAGGTAATGGATCACCAATCCTTGGAAAACACACTAGTAAAGATTCTGTTTTGACTCATGAAGAGAAGCCGGAAATGCGTGTTTTTGCACCAGACTCTTAG 1092 0.4011 MNSEGDMSVKDHSTIMLFGKKIPVPEYHTPATSQKGCQIQAKSTIMNACNNSKQTRIEMPRTQNIEIPKNSSKEENESKVTTSTVEDTMETSSTDQDKVLKKPDKIVQCPRCNSFDTKFCYFNNYNVNQPRHFCRNCHRYWTAGGTMRNVAVGAGRRKNKHIGSQYRQMIVASGGTPAANLEANDSLQHDNGIVLKFGLDVDASANNGTENREESSSLCVSSVTNGYTRGTELSETEQNRSNTLQSYPAFSWIVPMNQSWNNVTSMVQSSMQMYPTTMQWCHAPMVAVTNIFTPSIGLQFVPSSYGNGNVSIGSNGCISPSSSTTSNSLCSGNGSPILGKHTSKDSVLTHEEKPEMRVFAPDS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03542 363 MobiDBLite consensus disorder prediction 340 363 - -
Trre4g03542 363 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Trre4g03542 363 MobiDBLite consensus disorder prediction 61 97 - -
Trre4g03542 363 Pfam Dof domain, zinc finger 104 161 IPR003851 GO:0003677|GO:0006355
Trre4g03542 363 PANTHER CYCLIC DOF FACTOR 2 10 361 IPR045174 GO:0003700|GO:0006355
Trre4g03542 363 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Trre4g03542 363 MobiDBLite consensus disorder prediction 344 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03542 Trre-Chr4 42432844 42435014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03542 74 293 C2C2-Dof Transcription Factor Family AT5G39660 38.843 6.86e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre4g03542 zf-Dof 8.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03542 - - tpra:123887337 642.884