Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00666 ATGGCTGAAGAAGTTAGAAAAGATGAAGAGAATAATAATCAAGGGATTAAGCTATTTGGCACAACAATAAGACTACATGGTGAGGAATCAAAAGAAGGAGAAAAAGAAAGCGAAGATCGAACGGTGGAGAAGAGATCAGAAAAGATAATACCGTGTCCAAGATGCAAGAGCATGGAAACTAAATTCTGTTACTTCAACAACTACAACGTTAATCAACCAAGACATTTTTGTAAGGCCTGTCATAGATATTGGACGGCTGGTGGGGCCCTCCGTAACGTACCGGTTGGAGCCGGTCGGCGGAAGGCCAAGCTGCCGGGTCATGAAAATAGCGGTTCACCGGATAATTGTCTATATGAAGCTGGTTCCGATGATGGGGATAAGTGTCGCGACGGCATGCCTCCTCAGAGCGATTTCCCGGAAGTTTTCTCTGGTAAGCGGCGGAGGGTGACCTCAGATGGTTATTCGTTAGCCTTGTTGTGA 480 0.4583 MAEEVRKDEENNNQGIKLFGTTIRLHGEESKEGEKESEDRTVEKRSEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKAKLPGHENSGSPDNCLYEAGSDDGDKCRDGMPPQSDFPEVFSGKRRRVTSDGYSLALL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00666 159 MobiDBLite consensus disorder prediction 121 144 - -
Trre4g00666 159 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Trre4g00666 159 PANTHER CYCLIC DOF FACTOR 2 26 107 IPR045174 GO:0003700|GO:0006355
Trre4g00666 159 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Trre4g00666 159 MobiDBLite consensus disorder prediction 1 44 - -
Trre4g00666 159 MobiDBLite consensus disorder prediction 24 44 - -
Trre4g00666 159 Pfam Dof domain, zinc finger 48 103 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00666 Trre-Chr4 4778622 4779101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00666 12 106 C2C2-Dof Transcription Factor Family AT2G34140 67.273 4.57e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre4g00666 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00666 - - tcc:18596691 181.03