Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03818 ATGGATCCGCAACTTCTCTCCACGGCCGCTCCACCTAACATCGTCCAACAAAATTATCCTGAATCGGTAGAGTCGTCTTTATCATCACCATCACCACCACAGCCACCACCACGATCACGTGAAATAATGAACGATGAGTCTTTACCTAATGTCCCCGGATCCAAGCTTCGTCTTATGTGTAGCTATGGCGGACACATTATGCCGCGCCCACATGATAAATCCTTGTGTTACGTTGGCGGTGACACGCGAATTGTGGTGGTTGACCGGAGTGCTTCCCTGAGAGATCTTTGTTCGCGCCTTTCGAGAACAATTCTTAATGGAAGACCCTTTACTCTAAAATACCAACTTCCAAATGAAGATCTTGATAACCTCATCACAGTAACATCAGATGAAGATCTTGACAATATGATCGAAGAATACGATCGAATAGCATCTTCAACAATGAAACCTTCATCTTCAAGACTCAGAGTGTTTCTTTTCTTCACAAAACCAGATTCTACTCTTTCAATGGGATCTCTACTTGATGATGCAAAATCTGAAACATGGTTTGTTGATGCACTCAACAACTCAGGAATCCTCTCAAGGGGTGTATCAGATTCAGCAGGGGATTCTTTTGTGAATCTTGATAATGTTGCTGCTAGTGATTCAAGTAACAACTTGGAATCTCAAGTTGTAGCAGCAGAATCTATGAATCTCCTTGAAGACGTCAACAATAACAATGTTAAGAATGTTTTTGATGTTGTTAATGTTTCAAGTGGTGGACCTATGCTTGAGAATTGTCCATCTTCATCTTCATTGTCTCCTTCAATAGCGAATTTACCTCCGATTCGTGTTCGTGTTGACGAAAACGGTGGTAACCGGATTCAACAAGAGAATAAAGTTGTAATGAAGCAAGATGGTGGCTATGTTGTTTCTTATGCTAATGTGGCTATGGCTGCAATTCCTTCAGCTGGAGTTGTGACTACTACTGCTACTGTTAGTGATGTTAATGTGAATAGGGTTGTTTCTGATGATGAGAGATCAGATTATGGAGGAGTAATTGGATCTCGAAAACCGCCTTTGCCATTGCAGCTTGTTCAACCAAGGACTAGTGGTGGTGGGTTGAGTGTTCCTTCACCAGATTCAGTTACAAGTGATAATAGTAGTATTGCATCTACAAATTCTTTCTCCAAAATTGTTTATCATCAAGAACAAGTCCAACCAACAAATATAGACAACAAAGCTCAAGATTCAAGTTACATGTTACCACCACAAATGGATCAAAATCAACAACTCCAACAACCACAACAACAACAACAATTTGTTCATTCCAACACTCACTATATCCACCATCCTACATCCACAAATCAAGTTCCAATCTCATCATACTACCAAGTTTATCCCCAACAATCACAACAACAACAACTTCATAATCCAATTGGTCAACAACAATATCCAATTTATGTAATGCCTATTGGATCAACACAACCATATAACATGACATTACAACATAATATAAATGACCCTAATGTTGTAGCTTCTAGTAGGCCAATACTACCTCAAAGTGGTACTCCACCAATTTACCCTAATAAATCACCTAACCCTAATGTGGCAACAAATTCAACATTTGTTCAAGTACCTTCAAATCAATTTCAACAACAATATGTTGGTTTGCCTCAATTTCATCATCAACCACAACATCCTATTAATGTAGCTCCTTCTAATGGTGGTACTAATTATGGTTATGAATATGGTGGCAATGTGGAAGGTCAAGTGTACTATACTCAACAACAAACAAATGCTCCATTGGTTACTCAGTATCAATCCATGACTCCTGCAGCTGCTGCAGCAGCATTATCAGATGCTTCCAATCAATTTCCTGCAGATAATGCTCAGCAGCCAAATAGAACTTCGCAGCCGGTATAA 1905 0.3958 MDPQLLSTAAPPNIVQQNYPESVESSLSSPSPPQPPPRSREIMNDESLPNVPGSKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRSASLRDLCSRLSRTILNGRPFTLKYQLPNEDLDNLITVTSDEDLDNMIEEYDRIASSTMKPSSSRLRVFLFFTKPDSTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSAGDSFVNLDNVAASDSSNNLESQVVAAESMNLLEDVNNNNVKNVFDVVNVSSGGPMLENCPSSSSLSPSIANLPPIRVRVDENGGNRIQQENKVVMKQDGGYVVSYANVAMAAIPSAGVVTTTATVSDVNVNRVVSDDERSDYGGVIGSRKPPLPLQLVQPRTSGGGLSVPSPDSVTSDNSSIASTNSFSKIVYHQEQVQPTNIDNKAQDSSYMLPPQMDQNQQLQQPQQQQQFVHSNTHYIHHPTSTNQVPISSYYQVYPQQSQQQQLHNPIGQQQYPIYVMPIGSTQPYNMTLQHNINDPNVVASSRPILPQSGTPPIYPNKSPNPNVATNSTFVQVPSNQFQQQYVGLPQFHHQPQHPINVAPSNGGTNYGYEYGGNVEGQVYYTQQQTNAPLVTQYQSMTPAAAAAALSDASNQFPADNAQQPNRTSQPV 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03818 634 MobiDBLite consensus disorder prediction 608 634 - -
Trre3g03818 634 MobiDBLite consensus disorder prediction 9 28 - -
Trre3g03818 634 Gene3D - 75 161 - -
Trre3g03818 634 SUPERFAMILY CAD & PB1 domains 71 171 - -
Trre3g03818 634 SMART PB1_new 70 160 IPR000270 GO:0005515
Trre3g03818 634 CDD PB1_UP2 59 160 - -
Trre3g03818 634 ProSiteProfiles PB1 domain profile. 55 160 IPR000270 GO:0005515
Trre3g03818 634 Pfam PB1 domain 71 160 IPR000270 GO:0005515
Trre3g03818 634 MobiDBLite consensus disorder prediction 1 48 - -
Trre3g03818 634 MobiDBLite consensus disorder prediction 616 634 - -
Trre3g03818 634 MobiDBLite consensus disorder prediction 339 383 - -
Trre3g03818 634 MobiDBLite consensus disorder prediction 362 383 - -
Trre3g03818 634 MobiDBLite consensus disorder prediction 407 434 - -
Trre3g03818 634 PANTHER OS05G0427100 PROTEIN-RELATED 19 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03818 Trre-Chr3 49274753 49277314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03818 55 189 MAP Kinase Kinase Kinase AT5G57610 44.853 2.50e-27 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05942 1 63848862 63851338 Trre3g03818 3 49274753 49277314 ECH
Trre3g03818 3 49274753 49277314 Trre3g03818 3 49274753 49277314 ECH