Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00616 ATGGCTGAAGAAGTTAGAAAAGATGAAGAGAATAATAATCAAGGGATTAAGCTATTTGGGACAACAATAAAACTACATGGTGAGGAATCAAAAGAAGGAGAAAAAGAAAGCGAAGATCGAACGGTGGAGAGGAGATCAGAAAAGATAATACCGTGTCCAAGATGCAAGAGCATGGAAACTAAATTCTGTTACTTCAACAACTACAACGTCAATCAACCAAGACATTTTTGTAAGGGCTGTCATAGATATTGGACGGCTGGTGGGGCCCTCCGTAACGTACCGGTTGGAGCCGGTCGTAGGAAGGCCAAGCCGCCGGGTCATGAAGATAGCGGTTCACCGGAGAATTGTCTATATGAAGCTGCCGATGATGGTGATAAGTGGCGTGTCGGCACGCCTCCTCAGAGCAATTTCCCGGAAGTTTTCTCCGCTAAGCATCAAGGTCAATAA 447 0.4519 MAEEVRKDEENNNQGIKLFGTTIKLHGEESKEGEKESEDRTVERRSEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKAKPPGHEDSGSPENCLYEAADDGDKWRVGTPPQSNFPEVFSAKHQGQ 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00616 148 MobiDBLite consensus disorder prediction 95 148 - -
Trre3g00616 148 MobiDBLite consensus disorder prediction 24 46 - -
Trre3g00616 148 ProSitePatterns Zinc finger Dof-type signature. 52 88 IPR003851 GO:0003677|GO:0006355
Trre3g00616 148 ProSiteProfiles Zinc finger Dof-type profile. 50 104 IPR003851 GO:0003677|GO:0006355
Trre3g00616 148 Pfam Dof domain, zinc finger 48 103 IPR003851 GO:0003677|GO:0006355
Trre3g00616 148 PANTHER CYCLIC DOF FACTOR 2 18 107 IPR045174 GO:0003700|GO:0006355
Trre3g00616 148 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00616 Trre-Chr3 4189172 4190344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00616 12 144 C2C2-Dof Transcription Factor Family AT1G29160 51.250 1.73e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre3g00616 zf-Dof 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00616 - - cave:132172385 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00616 3 4189172 4190344 Trre3g00616 3 4189172 4190344 ECH