Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00488 ATGTTAGCTAACTGTGACAAAATGGTTGCCATCCCTCCTAACCAATGGCCACAGAATCAGATAGATGATGGTAAAGTAATTATGGAAAAACAAGGTCAAGAGCTTCTTCAACAACAAGCACTTAAGTGTCCACGTTGTGATTCATCAAACACAAAATTCTGTTACTACAACAATTACAGTTTGTCACAACCAAGACACTTCTGCAAAGCCTGCAAACGTTATTGGACAAGAGGTGGTACTCTTAGGAATGTTCCTGTTGGTGGTGGCTACAGAAGAAACAACAAAAGTAGTAAAAATAGTACAACTCTCATCAAAAGACCAATATCCACCATTGATTCTACTACTTCCACTTCTTCAGCTCCTAGTTCAACCTTAAATCATATTAGTCCTATGTTTTATGGTTTATCTAGACTCTCAAGTTCATCTGAGTATGATTTTCATCATACTCAGATGAACTCGAATGGATTAGGCGGCTTTTTGTCGTCCGGGTTTGATCATAATGGATTTACTTCAAATAATAATAACAATCATGTTTCAAGATATGATTCAATCTTTGGTTCTGTTTCTTCTTCTTCTTCAACTTCAATGTCAGTTATGCCTTCTGTGTTGAGTTCTACTCTGCTGCAACATAATTTCAACAATGATGGTTTGAAATATAATCAAGATGGAGGTAGCAATTGTACTTTTCAAGGTTTAGAATTTGCTTCACTTGAGCAGATGCAAAGAGCTATAAGTAATATTGGGAATGGAAGTGAGAAAGGAATGAAGAAAGTTGAAGGACAGAATCAGATTGAGCATGTGAGTGGTTTGTATGATCCTTCTTCATTTTTCTGGAATGATCAAGGTTCTAATATTGGTTCATCAGTCACTTCTCTGATCTCGAATGAATAA 891 0.3614 MLANCDKMVAIPPNQWPQNQIDDGKVIMEKQGQELLQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRRNNKSSKNSTTLIKRPISTIDSTTSTSSAPSSTLNHISPMFYGLSRLSSSSEYDFHHTQMNSNGLGGFLSSGFDHNGFTSNNNNNHVSRYDSIFGSVSSSSSTSMSVMPSVLSSTLLQHNFNNDGLKYNQDGGSNCTFQGLEFASLEQMQRAISNIGNGSEKGMKKVEGQNQIEHVSGLYDPSSFFWNDQGSNIGSSVTSLISNE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00488 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 212 IPR045174 GO:0003700|GO:0006355
Trre3g00488 296 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Trre3g00488 296 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Trre3g00488 296 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00488 Trre-Chr3 3248116 3249249 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00488 1 293 C2C2-Dof Transcription Factor Family AT1G28310 35.376 2.83e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre3g00488 zf-Dof 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00488 - - psat:127081971 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00488 3 3248116 3249249 Trre3g00488 3 3248116 3249249 ECH