Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00487 ATGGAGCAAGAAGGTAGTAATGGTGGAAGAAGAGCTGAGTTGAATAGGCAACTTCATGCTCCTTCTGAGCCTAAGCAGTGCCCTAGGTGTGAGTCATTCAACACGAAGTTCTGTTACTTCAATAACTACAGCTTGGGCCAGCCTCGGTACTTCTGCAAATCATGCAGAAGATACTGGACTATAGGTGGAACATTGAGAAATGTTCCGGTTGGTGGCGGTAGCCGTAAGGGAAAACGAGCTAAGACCTCACCTTCGGCTTCCGGAAGTAATTCCTCTAGGAATTCTTCTGTGTCTCAGTCAATGCTGACACAGCAGACTGCTGTTCAGTCTGCTGTGGCTGCGATGGCTAAAGACTCTGCTTTGATGGCTTCTTTCTCCTCTGCTGCACCTTTTTATCAAGGTGGTGGTGGGGTTGGTTACATGTCGCCTTTTGCGGGGTTTAACCAACCTATGAATCCAAACACTTTCGAGCATGCTTCGCTGAATCTCGGTGGTGTTGGTTCTTCAAATTTAAGTCTTTTACGAGGCTTTAATATGGCTGCTGCTGCCGCCCTTGGAAACTCATCACAAGGGCCAAATCGTCCATCCCTGCAACAATACTATCAAATGGGTGGTAATGGTGGAACAATGTTCACCTCACAACAACAAGGTCTGAACTTGATTTCCCCATCTACCATGTCCAATGGTAGTGCTGTTACTTGGCCTCAGAGCTTCTTCAACAATGGTACTATCAGCACCACTTCCATTCCTAGTGGTAATTCTGATATGAATGGTAGTAGTGCTGGTGGTAGTGATATCAGTGGTGTTGGAGTTGGAGCTGGAGCTGGAGTGGGTGCTGGTGCTGGAATTGGAGCTGGAGATGGTGTTGGAGTTTCTGCTGCTTTGACTTCAAGTCAATGGCCGGATCTGTCCGGATTCAACGCTCCTCAGTGA 933 0.4759 MEQEGSNGGRRAELNRQLHAPSEPKQCPRCESFNTKFCYFNNYSLGQPRYFCKSCRRYWTIGGTLRNVPVGGGSRKGKRAKTSPSASGSNSSRNSSVSQSMLTQQTAVQSAVAAMAKDSALMASFSSAAPFYQGGGGVGYMSPFAGFNQPMNPNTFEHASLNLGGVGSSNLSLLRGFNMAAAAALGNSSQGPNRPSLQQYYQMGGNGGTMFTSQQQGLNLISPSTMSNGSAVTWPQSFFNNGTISTTSIPSGNSDMNGSSAGGSDISGVGVGAGAGVGAGAGIGAGDGVGVSAALTSSQWPDLSGFNAPQ 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00487 310 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Trre3g00487 310 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 196 IPR045174 GO:0003700|GO:0006355
Trre3g00487 310 MobiDBLite consensus disorder prediction 1 26 - -
Trre3g00487 310 Pfam Dof domain, zinc finger 24 79 IPR003851 GO:0003677|GO:0006355
Trre3g00487 310 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Trre3g00487 310 MobiDBLite consensus disorder prediction 80 102 - -
Trre3g00487 310 MobiDBLite consensus disorder prediction 69 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00487 Trre-Chr3 3238098 3239030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00487 21 90 C2C2-Dof Transcription Factor Family AT3G61850 74.286 1.39e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre3g00487 zf-Dof 2.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00487 - - tpra:123905519 374.785