Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02275 ATGGAGAGTGAGTGGAAAGCTAATGAGATATCACCAAATTGTCCAAGATGTGGTTCATCCAACACAAAATTCTGCTACTACAATAACTACAGTTTAACTCAACCAAGATACTTTTGCAAAGGATGCAGAAGGTATTGGACAAAAGGTGGATCCCTCAGAAATGTTCCTGTTGGTGGTGGCTGCAGAAAAAACAGAAGAGGTAACAACAAAACCTTATTAAGACAACAATCCTTTGATTCTCTCACTTTCAAAAACTCTGACACAATTGGTCATCATTCTTATGATCCTATTTTGAGGACTAATAATATTATTTCATCTTCTTCTTGCTCCTCATTGGTGAATACTGATAGACCAAATATTGATCTTGCATTAGTTTATGCAAATTTCCTCAATAAAAAGCCTGATTCTCAGAATAATTCTGATCAAATGGAAAAAAGACCTTTTGATCCTTCTTTAGAAAATTCAAGGCTATCCAATGTTGAAGTTGGTACAAGTAGTTTCAATTTGTCTGAAATAGAAATTGGTCTCAAAGGATGTTTGAATCTTAATCAAGAACAATTACCATCCACAATACCAAATTTTAGCGAGGTTGAGAATAATCAAATGTATTGTAGTGAGTTTCATTCTATGGAGATTCTTCAGAAAGATAGAATTGATCATCAATTACAATGTAGTAATCATGACGATAGTGTGAATTTTGAGCTTCCACCTTTACCAGGTGAAGAGGATTCATCATCACATGATCATGTTTTGTGGTCCAATTCTGAAATGATGATGAACCTTCCATTTCAAGTCACTCAACCTCCACCACCACCACTTCTTGGACCTGATCAAATTCATGATGCAGACTTGTTAATTGGTAATTGGAGTCCTTTTGATTTTACAAGGGATGCTTCTTTTTCTAGGCCTTGA 912 0.352 MESEWKANEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNNKTLLRQQSFDSLTFKNSDTIGHHSYDPILRTNNIISSSSCSSLVNTDRPNIDLALVYANFLNKKPDSQNNSDQMEKRPFDPSLENSRLSNVEVGTSSFNLSEIEIGLKGCLNLNQEQLPSTIPNFSEVENNQMYCSEFHSMEILQKDRIDHQLQCSNHDDSVNFELPPLPGEEDSSSHDHVLWSNSEMMMNLPFQVTQPPPPPLLGPDQIHDADLLIGNWSPFDFTRDASFSRP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02275 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 185 IPR045174 GO:0003700|GO:0006355
Trre2g02275 303 Pfam Dof domain, zinc finger 13 66 IPR003851 GO:0003677|GO:0006355
Trre2g02275 303 ProSitePatterns Zinc finger Dof-type signature. 14 50 IPR003851 GO:0003677|GO:0006355
Trre2g02275 303 ProSiteProfiles Zinc finger Dof-type profile. 12 66 IPR003851 GO:0003677|GO:0006355
Trre2g02275 303 MobiDBLite consensus disorder prediction 134 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02275 Trre-Chr2 18719499 18720410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02275 5 298 C2C2-Dof Transcription Factor Family AT3G52440 39.216 9.92e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre2g02275 zf-Dof 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02275 - - psat:127092130 361.688