Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01371 ATGTCATCGGATATTCCTCGAAAGTTTTTCAGGCTTATGAGAAATGAAGATCTTCAAAACGGAGAAATTAGGGTTCCAAAAGCATTTGTGAGTAATAGAGGAGACATGAATAAGAAGGCCAAAAAATGCTCAACAAGTAAAGGAAATTTGAATGGAAGAGATGAAGAAATAGAAGAAGTTGAATTGAGTGATGATATTGATAATAAGAGCTCAGATTATGACAGTGACATGCCCACACAAATTCAAAGGACAAAAAATGGCAAAAGAAAAGGAAGAAAGAGAACAATAAATTATCGTTCTTGTGGTGAGAATCCTGGTTTTGAACTTCAATTGTCACGTTCATACGCCCTTGGTCGTTGTTTGAGGATACCAAATGATTATTCTAGAGAATACTTGAAGGGGTTCAAAGGAACTGTGAAGATTAGATTTGGTGATGACAAGGCTATGAAAGTGAAGTTGATTATTGATGCCAATGGATCATCAATTATTACTAAGGGTTGGAAGTCATTTGCTGAAAAATATAACTTGAAATTTAAAGTTGGTTATATATGTAAATTTGAGATGACTCAAAGCAATCCATTTTCATTCACTATTACTATTAATCCAGCCATAATCAAACCATGTTATAAAGGAAGAAACTCTTCTAGTGATAACAATATTGGGGTGAGAAATTGCAACACTAAAGGAACTTCTAGCAACCGCCGTGTTATCTCGGATTCAAAAGGTCGTAATGTGATGAAGCATGACACATTTGAGGTTAAAGTCACTTCCACCGTCTACCAGTATGTACCAAATAAGTTTTTGCATAGACATAAAGAATGTTGTGGAAAATTCGTGGAGTTGATAGTGAATGGAAAGTCATGGTCCGTAAAAGTGAAGTATCATCATCAAGGTAGTAGTAGATTATCGTCAGGTTGGACAAAGTTTATGAAAGAATGCAAATTGGAGATTGGAGACCGTTGTCGCTTTAAGTTGATTGATGAGGAAAATTTTGTGTTTGAAGTTTCATATGAAAGAAAGAACGTTACTCTTCATCCGGTTGTTACCTCTGTTTCCTCGGAGAGAACGTTTCGCGATTCCGGACTCAACCCTCTTTCTCTGAAGGTTTGA 1110 0.3595 MSSDIPRKFFRLMRNEDLQNGEIRVPKAFVSNRGDMNKKAKKCSTSKGNLNGRDEEIEEVELSDDIDNKSSDYDSDMPTQIQRTKNGKRKGRKRTINYRSCGENPGFELQLSRSYALGRCLRIPNDYSREYLKGFKGTVKIRFGDDKAMKVKLIIDANGSSIITKGWKSFAEKYNLKFKVGYICKFEMTQSNPFSFTITINPAIIKPCYKGRNSSSDNNIGVRNCNTKGTSSNRRVISDSKGRNVMKHDTFEVKVTSTVYQYVPNKFLHRHKECCGKFVELIVNGKSWSVKVKYHHQGSSRLSSGWTKFMKECKLEIGDRCRFKLIDEENFVFEVSYERKNVTLHPVVTSVSSERTFRDSGLNPLSLKV 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01371 369 MobiDBLite consensus disorder prediction 67 92 - -
Trre2g01371 369 Gene3D - 231 341 IPR015300 -
Trre2g01371 369 Gene3D - 84 204 IPR015300 -
Trre2g01371 369 Pfam B3 DNA binding domain 107 200 IPR003340 GO:0003677
Trre2g01371 369 Pfam B3 DNA binding domain 257 336 IPR003340 GO:0003677
Trre2g01371 369 ProSiteProfiles B3 DNA-binding domain profile. 246 341 IPR003340 GO:0003677
Trre2g01371 369 SUPERFAMILY DNA-binding pseudobarrel domain 253 336 IPR015300 -
Trre2g01371 369 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 122 341 IPR039218 -
Trre2g01371 369 SUPERFAMILY DNA-binding pseudobarrel domain 103 198 IPR015300 -
Trre2g01371 369 CDD B3_DNA 262 339 IPR003340 GO:0003677
Trre2g01371 369 CDD B3_DNA 105 200 IPR003340 GO:0003677
Trre2g01371 369 MobiDBLite consensus disorder prediction 36 55 - -
Trre2g01371 369 SMART B3_2 107 204 IPR003340 GO:0003677
Trre2g01371 369 SMART B3_2 251 339 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01371 Trre-Chr2 10946401 10951148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01371 121 326 REM Transcription Factor Family AT4G31690 27.778 6.08e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre2g01371 B3 1.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01371 - - cam:101508042 212.616