Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06046 ATGCAAAACTTCAACACACCTCAATCAGATTTACCATTCTATTCTCACTCTCCCTTCTTGCTTCGGGGAGATGAACCCTTCCCCAATCTTAATCCAACGCGTTTCTTTGATCCTCAACTTTCATTTCAACAACACCATCATGCTTTTGATTTAAGTTCTGTGTTTGGTGCAAAGTCTAACAATGTTGCTGTTGTTGCAAGTAACTTGCAGTACGGAACATTCAACAATTGTAACCTTGGTTCAGCTTCTTCAGCTATGGAAGATAACAGTCAAAAGACTGAAGATACTTCAACAGAAGATAATATTGACACTGATCATAAAAATAACCAATGTTTCTCTAATGTGTCTTGGAGCAATGGTGTTGGGAACAAAGCTCTTGTAGATGTTGACTCCAGGGATCAATATAATAGTACTAAGGATAAAACTGAGGAGCAAAAGGCTCTTCGTCGGCTGGTGCAGAATCGCGAGGCTGCAAGAAAAAGTCGGTTAAGGAAAAAGGCATATGTGCAGCAATTGGAGAATAGTCGACTTAGGCTTGCTCAAATAGAGCAAGAGCTTCAACAAGTACAACAACAGGGTCTATTTGTTGCAAATGGAGTTGCAGCGGATCGTGGTCATTCAGTTGTTGGAAATGGTGCATTAGCATTTGATATGGACTATGCCCGTTGGGTTGACGAACATCAACGATTAATCAATGACATAAGATTAGCTATAAATTCACAAATCGGCGATAATGAACTGCATCTTCTTGTTGATGGTGTCATGACACATTATGATGAGTTATACAAGTTGAAGAGTATAGGTGCAAAGGCTGATGTATTTCACATACTTTCTGGGTTGTGGAAAACACCTGCCGAAAGATGTTTCATGTGGCTTGGTGGATTCCGTTCATCTGAACTTCTCAAGATAGTTAGAAACCACCTCGAGGCATTAACGGATCCACAGTTGATGGCGATCTACAATCTGCAGCACTCTTCTCAGCAGGCTGAAGATGCATTATCTCAAGGCATGGAAGCATTGCAACAATCTCTTACAGAAACACTTTCCTCTACCTCTATTGGATCTGGAAATGTTGCCGAGTACATGGGCCAAATGGCCATTGCAATGACCAAACTTGCCACACTAGAGACTTTCATTCATCAGGCTGATCTCTTGAGGCAACAAACACTGCAACAGTTGAATATAATTTTGACCGTGCGCCAAGCTGCTCGTGCTCTCCTTGTCATTAATGATTTCATTTCGCGAATTCGAGCACTCAATTCATTATGGTTAGCATGTCCTAAAGAATACTAG 1293 0.4107 MQNFNTPQSDLPFYSHSPFLLRGDEPFPNLNPTRFFDPQLSFQQHHHAFDLSSVFGAKSNNVAVVASNLQYGTFNNCNLGSASSAMEDNSQKTEDTSTEDNIDTDHKNNQCFSNVSWSNGVGNKALVDVDSRDQYNSTKDKTEEQKALRRLVQNREAARKSRLRKKAYVQQLENSRLRLAQIEQELQQVQQQGLFVANGVAADRGHSVVGNGALAFDMDYARWVDEHQRLINDIRLAINSQIGDNELHLLVDGVMTHYDELYKLKSIGAKADVFHILSGLWKTPAERCFMWLGGFRSSELLKIVRNHLEALTDPQLMAIYNLQHSSQQAEDALSQGMEALQQSLTETLSSTSIGSGNVAEYMGQMAIAMTKLATLETFIHQADLLRQQTLQQLNIILTVRQAARALLVINDFISRIRALNSLWLACPKEY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06046 430 FunFam BZIP family transcription factor 145 194 - -
Trre1g06046 430 Coils Coil 165 192 - -
Trre1g06046 430 Coils Coil 141 161 - -
Trre1g06046 430 SUPERFAMILY Leucine zipper domain 146 189 IPR046347 GO:0003700|GO:0006355
Trre1g06046 430 MobiDBLite consensus disorder prediction 83 107 - -
Trre1g06046 430 ProSiteProfiles DOG1 domain profile. 213 426 IPR025422 GO:0006351|GO:0043565
Trre1g06046 430 Gene3D - 146 194 - -
Trre1g06046 430 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 149 164 IPR004827 GO:0003700|GO:0006355
Trre1g06046 430 Pfam Seed dormancy control 231 305 IPR025422 GO:0006351|GO:0043565
Trre1g06046 430 Pfam bZIP transcription factor 143 175 IPR004827 GO:0003700|GO:0006355
Trre1g06046 430 PANTHER TRANSCRIPTION FACTOR TGA9 86 429 - -
Trre1g06046 430 SMART brlzneu 142 213 IPR004827 GO:0003700|GO:0006355
Trre1g06046 430 MobiDBLite consensus disorder prediction 92 106 - -
Trre1g06046 430 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 144 188 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06046 Trre-Chr1 64717103 64720329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06046 3 429 bZIP Transcription Factor Family AT1G68640 51.471 2.39e-142 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre1g06046 DOG1 1.7e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06046 1 64717103 64720329 Trre1g06046 1 64717103 64720329 ECH