Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06043 ATGGCGGAAGAGTTGGGGGTTTTCATTCCTCATGTTGGTGGAGTGGAACATGCTAGTGCGTTGCTCCCACCTCTGGAGGCATTTTGCAGTGTTGAGGAAACTTGTGTGAGGGATAAAGCTGTTGAGTCACTTTGTCGAATTGGATCTCAAATGAAGGAGAGTGATCTGGTTGAATATTTTATCCCATTGGTGAAGAGATTGGCAGCAGGTGAATGGTTTACTGCCCGAGTCTCTGCATGTGGTCTATTCCATATTGCTTACAATAGTGCACCAGAAGCATCAAAGACAGAGTTGAGATCAATATACAGTCAGTTATGTCAGGATGATATGCCTATGGTTAGAAGATCTGCTGCAACAAATCTTGGGAAATTCGCTGCAACTGTTGAGTATACTCACTTAAAGGCTGACATCATGAGTATTTTTGACGATCTTACTCAGGATGATCAAGATTCTGTCAGATTGTTAGCTGTGGAGGGATGTGCTGCCCTTGGAAAACTGTTGGAGCCACAAGATTGTGTTGCACATATACTCCCAGTTATTGTTAATTTCTCCCAGGATAAGTCTTGGCGTGTGCGTTATATGGTTGCAAATCAATTGTATGAGCTCTGTGAAGCTGTAGGCCCTGAAACTAGCAGAGCGGAATTGGTTCCTGCCTATGTTCGATTGCTTCGAGATAATGAGGCTGAGGTACGCATAGCAGCTGCTGGGAAAGTCACCAAGTTTTGTCGGATTTTAAGTTCAGAGCTTGCGATTCAGAATATTCTTCCTTGTGTAAAGGAATTGTCATCAGACTCTTCGCAGCATGTCCGCTCTGCTCTGGCTTCTGTAATAATGGGAATGGCTCCAGTGTTAGGAAAGGAAGCAACAATTGAGCAGCTTCTTCCTATTTTCTTATCTCTTCTGAAGGATGAATTTCCTGATGTGCGCCTAAACATCATCAGCAAGCTTGATCAAGTGAATCAGGTTATTGGAATCGATCTATTATCTCAATCTTTATTACCAGCCATTGTTGAGCTTGCAGAGGATAGGCATTGGAGGGTTCGGCTTGCAATTATAGAGTATATACCCTTATTGGCAAGTCAATTGGGGGTTGGATTTTTTGACGACAAATTGGGTGCTCTTTGCATGCAGTGGTTACAGGACAAGGTTCATTCAATTCGTGAAGCAGCTGCTAAGAACTTGAAACGTCTAGCTGAAGAGTTTGGTCCTGAGTGGACTATGCAGCACATAATTCCGCAGGTTTTGGAGATGATTAACAATCCACACTATTTGTATCGGATGACAATTCTTCGTGCTATCTCCCTGCTAGCCTCTGTAGTGGGACCTGAAGTCACTTGTTCAAAGTTGTTGCCTGCTGTTGTTACAGCATCAAAAGACAGAGTGCCCAACATTAAGTTCAATGTGGCAAAGGTATTAGAGTCCATCTTCTCCATTGTTGATCAGTCTGTGGTAGAAAAGACTATTCGACCATGTCTGGTTGAGCTCAGTGAGGATCCTGATGTTGATGTGCGATATTTTTCCAGCCAAGCCTTGCAGGCAATTGATCATGTCATGATGGCTAGCTAG 1566 0.4342 MAEELGVFIPHVGGVEHASALLPPLEAFCSVEETCVRDKAVESLCRIGSQMKESDLVEYFIPLVKRLAAGEWFTARVSACGLFHIAYNSAPEASKTELRSIYSQLCQDDMPMVRRSAATNLGKFAATVEYTHLKADIMSIFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPETSRAELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSSELAIQNILPCVKELSSDSSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIREAAAKNLKRLAEEFGPEWTMQHIIPQVLEMINNPHYLYRMTILRAISLLASVVGPEVTCSKLLPAVVTASKDRVPNIKFNVAKVLESIFSIVDQSVVEKTIRPCLVELSEDPDVDVRYFSSQALQAIDHVMMAS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06043 521 SUPERFAMILY ARM repeat 5 514 IPR016024 -
Trre1g06043 521 ProSiteProfiles HEAT repeat profile. 98 136 IPR021133 -
Trre1g06043 521 ProSiteProfiles HEAT repeat profile. 176 214 IPR021133 -
Trre1g06043 521 ProSiteProfiles HEAT repeat profile. 137 175 IPR021133 -
Trre1g06043 521 Pfam HEAT repeats 295 395 - -
Trre1g06043 521 ProSiteProfiles HEAT repeat profile. 488 521 IPR021133 -
Trre1g06043 521 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 1 515 - -
Trre1g06043 521 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 1 516 - -
Trre1g06043 521 ProSiteProfiles HEAT repeat profile. 332 370 IPR021133 -
Trre1g06043 521 Pfam HEAT repeat 176 204 IPR000357 GO:0005515
Trre1g06043 521 ProSiteProfiles HEAT repeat profile. 410 448 IPR021133 -
Trre1g06043 521 ProSiteProfiles HEAT repeat profile. 293 331 IPR021133 -
Trre1g06043 521 Gene3D - 1 517 IPR011989 -
Trre1g06043 521 ProSiteProfiles HEAT repeat profile. 215 253 IPR021133 -
Trre1g06043 521 ProSiteProfiles HEAT repeat profile. 449 487 IPR021133 -
Trre1g06043 521 ProSiteProfiles HEAT repeat profile. 371 409 IPR021133 -
Trre1g06043 521 ProSiteProfiles HEAT repeat profile. 254 292 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06043 Trre-Chr1 64699519 64705769 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06043 1 64699519 64705769 Trre1g06043 1 64699519 64705769 ECH