Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06038 ATGCCCTCCGATGCACACGACTCTCGTCGCAAGCATCGCCGATCATCCTCTCCCGATGACCACGACAAATCCTCCAAGCGTCACAAGCACCGCCACCATCATCACCGCCACCGTCACGGAACAAAAAAACGCGACGAGGAGATTCAATTCGACGATGAAACCGTAGCCGCGGTTCCTTCTCAAAGTCCTCCGCCTAATCCAGCTCCGCGTAACCATCTCCATGAGGATGATGTTGAGGAGGGAGAGATTCTTGATGACGAGGCTTTCGAGGTTGGAAAGAAGCAAATTGAATCCGATGTTGAAGCTGGTGAAATTGAGGTGAAAGAAGATCGAGATCTTCGATCTGATAAGAAAATTCCGGGACTTCCCACTAAAAGTTCGAAAACCGAAAGTGAGGACTTTAACAATGATAAGGTTGTTAGTCCTACTTCTGATGCCGAAGATGGGAAATGGCGTCAGAGCCATGTTGATTCTCGAATTCATGAAGATGGTGATTCTCCAAACCACTCAAGAGCTGAAACTCTATCTGGCACTGATGCTTTGGGCAATGGGTATTTGGATGTTAAGTCTTCCAAAAGGGATAAGAGACACAATGGGTTAGTTGAACATTTTAAAGGAACTGAGAAACATAAAGGTGACTTTGACGATGAAGCACTGGAGGCTAATAGAAGGGACGTGAATTCCCACAGGAATTCCTCTGAAAGTGGGGAAGAAAAACAAAGAGTGTCAGGGAATTCTCCTTTGCAGGATGGATACCGAAGTCGATCAAGATCAATTGGTCATACAAGAGACAGGTCTCGTTCTCGTAGTGTAGTAGAAGAGTATGCTCATCGCAAGAGCAGGCACTCTAGGGAACAAGGTTCCCTTTATGAGACCAGCAGGCATAAGACTGACTATGACCTTGACGAGGAAAGAGCGAGGGAATACAGAAGGGAGCATCGTCGTGGAAGTAAGGATCTGCTGGAAGATGATAGACGGGAACACAGTACCAGGTACCACAGTCGGGAGGCCCGGGATAGGGCTAGGGATAAGGATAGGAGTAGAGATAAAGATGTGGATAGAGACTTGCACAGGGAAAAGAAGCGGGAGGAAACTAGCAGGGATAAGGAGGTTGATTGGGTGCGTAGAAGGGAAAAAGAACGTGGAAGGAATCATGAGAGGCATAGAAACGATGTGGAAAAAGATAGGAGCAGGGAAAGTGACGAGGGTAGGGATAGGAGAAGAGAAAAGGAAAGAGATAGGAGCAGGGACACAGTTTATGAGAGGGATAGGAGAAGGGAATTGGAAAGAGCTATAAGTAGAGATAGACCAAGGGGTGGTGATAGAGAGAGAGATTGGAAGAGTGAACGAGATTATAGGAATCGGGAACGGGATAATATTAAGGAGAGGGACAGACGAGATGATAGATATCGGCACAATGATAAAGACGCTCTGAATGGCGAGGATAAATATATGCGTCGGGAGGATGGTAATGACAGTGGAGATAGATATAAAAAACATTCAAGACACGAAGAAAATGGATACCATGCAGATCGGAAGAGGGACTATACCATGGAAGAGGATGAAAGGAAACTAAAAGGCAACGAGGTTGAACAAGATGATGTAGATGAGGATACATTGGAATTACCTGAGCAAGAAGAGGAAGATCTGAACAGAATCAAAGAGGAGAGTAGAAGAAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGAACCAGCAAATACAACAAGCAGCTGGAAATGAAGAAAAAGACAAGGGCGTGGAGATTCATGCTGACATTTCTAAAGCAAGTGATGGTAAGAGTGATGATGTTGATGATGTGGAACCATCATTTTCTGTTGGGAAATCCCCACCGGAAAATGTGGACGTTGGCTCAGAGAAGGTGCCTGGTGCTGGGGGCCTAGGAGAGGGTACTCCAAAGAGCGAGGGGTCAGCTGACAAGTATTGTGATGATATATTTGGGGAGACACCAACTGGAGTTCGGAAATCGGGAAAAGGAGATGGATTACTGATCGAGAGAGTTGGCCTGCATGACAATTGGGATGATGCAGAGGGATATTACAGCTATCGTTTCGGTGAAATACTTGATGGCCGATATGAAGTTACTGCTGCACATGGGAAAGGTGTCTTTTCAACAGTTGTACGAGCTAAGAATCTAAAAGCTGGTAATGGCGAGCCAGATGAAGTAGCAATAAAAATAATTCGTAATAATGACACCATGTACAAGGCTGGTTTGGATGAATTGGTTGTTTTGAAGAAATTAGTAGGTGCAGATCCGGATGATAAACGTCATTGTGTTCGTTTCCTTTCAAGCTTTAAGTACAGAAATCATCTATGTTTAGTTTTTGAATCTCTAAATATGAATCTGCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGGCTTAGGCTAACAGCTGTGAGGGCATATGCAAAACAGCTTTTTATTGCACTGAAGCATCTCCGTAACTGTGGTGTTTTGCACTGTGATATAAAGCCGGATAATATGTTGGTGAACGAGGCTAAAAATGTTTTGAAGCTCTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTAACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATAATTCTTGGCTTGCAGTATGATCATCCGTTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAATTGTATACAGGGAAAGTTCTTTTTCCAGGGCTCACAAACAATGACATGCTGCGACTTCACATGGAATTGAAGGGCCCTTTTCCCAAAAAGATGCTTCGTAAGGGAGCATTTACTGAACAACATTATGATCAGGATCTATGTTTTTATGCTACCGAGGAGGATCCTGTAACAAAAAAGGCCATTAAGCGGATGATTCTTAACATAAAGGCGAAAGATATTGGAACAATCATCACTGGCTCTCCCGGGGAGGATCCAAAAATGGTGGCCAATTTCAAAGATCTTCTGGATAAAATTTTCGTCTTGGATCCGGAAAAGAGGTTGACAGTCTCACAAGCATTGAACCACCCATTCATCACTGGCAAGTGA 3057 0.44 MPSDAHDSRRKHRRSSSPDDHDKSSKRHKHRHHHHRHRHGTKKRDEEIQFDDETVAAVPSQSPPPNPAPRNHLHEDDVEEGEILDDEAFEVGKKQIESDVEAGEIEVKEDRDLRSDKKIPGLPTKSSKTESEDFNNDKVVSPTSDAEDGKWRQSHVDSRIHEDGDSPNHSRAETLSGTDALGNGYLDVKSSKRDKRHNGLVEHFKGTEKHKGDFDDEALEANRRDVNSHRNSSESGEEKQRVSGNSPLQDGYRSRSRSIGHTRDRSRSRSVVEEYAHRKSRHSREQGSLYETSRHKTDYDLDEERAREYRREHRRGSKDLLEDDRREHSTRYHSREARDRARDKDRSRDKDVDRDLHREKKREETSRDKEVDWVRRREKERGRNHERHRNDVEKDRSRESDEGRDRRREKERDRSRDTVYERDRRRELERAISRDRPRGGDRERDWKSERDYRNRERDNIKERDRRDDRYRHNDKDALNGEDKYMRREDGNDSGDRYKKHSRHEENGYHADRKRDYTMEEDERKLKGNEVEQDDVDEDTLELPEQEEEDLNRIKEESRRRREAIMEKYKKQNQQIQQAAGNEEKDKGVEIHADISKASDGKSDDVDDVEPSFSVGKSPPENVDVGSEKVPGAGGLGEGTPKSEGSADKYCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGKGVFSTVVRAKNLKAGNGEPDEVAIKIIRNNDTMYKAGLDELVVLKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHYDQDLCFYATEEDPVTKKAIKRMILNIKAKDIGTIITGSPGEDPKMVANFKDLLDKIFVLDPEKRLTVSQALNHPFITGK 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06038 1018 Gene3D Transferase(Phosphotransferase) domain 1 760 1016 - -
Trre1g06038 1018 SMART serkin_6 700 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06038 1018 MobiDBLite consensus disorder prediction 582 610 - -
Trre1g06038 1018 FunFam Serine/threonine-protein kinase PRP4 homolog 760 1016 - -
Trre1g06038 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Trre1g06038 1018 MobiDBLite consensus disorder prediction 143 169 - -
Trre1g06038 1018 Gene3D Phosphorylase Kinase; domain 1 671 759 - -
Trre1g06038 1018 MobiDBLite consensus disorder prediction 25 41 - -
Trre1g06038 1018 Coils Coil 554 585 - -
Trre1g06038 1018 Pfam Protein kinase domain 702 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06038 1018 MobiDBLite consensus disorder prediction 238 255 - -
Trre1g06038 1018 MobiDBLite consensus disorder prediction 1 646 - -
Trre1g06038 1018 CDD STKc_PRP4 699 1015 IPR044092 GO:0004674|GO:0006468|GO:0045292
Trre1g06038 1018 MobiDBLite consensus disorder prediction 188 237 - -
Trre1g06038 1018 MobiDBLite consensus disorder prediction 1 24 - -
Trre1g06038 1018 MobiDBLite consensus disorder prediction 87 123 - -
Trre1g06038 1018 MobiDBLite consensus disorder prediction 256 531 - -
Trre1g06038 1018 MobiDBLite consensus disorder prediction 546 568 - -
Trre1g06038 1018 FunFam serine/threonine-protein kinase PRP4 homolog 671 759 - -
Trre1g06038 1018 PANTHER DUAL SPECIFICITY PROTEIN KINASE 375 1016 - -
Trre1g06038 1018 SUPERFAMILY Protein kinase-like (PK-like) 687 1017 IPR011009 -
Trre1g06038 1018 ProSiteProfiles Protein kinase domain profile. 700 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06038 Trre-Chr1 64667413 64673173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06038 707 1012 Core Cell Cycle Gene Families AT1G66750 30.284 1.97e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Trre1g06038 Pkinase 1.6e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06038 1 64667413 64673173 Trre1g06038 1 64667413 64673173 ECH