Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06017 ATGAGTTGTTCAAGTAAGAAAGCTGCAAACGCAGTTGGAGGCAAAACTGCTAGAGCTTGTGACAGTTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCTGATGATGCTTTTCTTTGTCAAGCTTGTGACTCTTCAGTTCATTCAGCTAATTCTTTAGCTAGAAGACATGAAAGAGTTCGTTTGAAAACCGCGTCGTATAAGTCCACCGGTGACGATGAATTCAATAATTCCGGTCCTTTTTCCGGCTTCACTAAGAAAGCAAGAACGCCGAGACAGGGGAAACACAAATCATCGCCGAGTAATGAACCGGCGAGGAATAATAATAACCCGTTTCATCTTGTTCCGGAGATTGGTTTCGATGAAGTGAATTCACTTTCACATGATGAAAATGAGGAGCAACTTCTTTATAGGGTACCGATTTTCGATCCTTTTGTTGCTGAATTATGTAGTACTAGTCCTCCTTCGGTTGGTTCAAGTGAAGGAGGACCAGGAACTATAACTATTGCTTCTGCTACTTTCACTCCTGATGCTGAAAACATCAGGAGCGAAAACAGAGGTGGTAGTAACAATTATGAGATGGAAAGCTTTCACGGGCTTCTTCCATCTGATATTGAATTAGCCGAATTTGCAGCCGATGTTGACAGTTTATTGGGTAGGGGACTAGAAAATCAGTGTATAGGGATGGAAGAGTTAGGATTGATTGATACAAAACATGAGAAGGAAGGTGAGTGTATTGGGAAGGTGAAGGAAGAAGGTGAAGAGAACCATGAAGAAGTTGTAGAGGTAGATAATATAGAGATGATGGGAAAAGAATCTTCATTTGAGTTGAATTTTGATTATGATGAATCTCATGAAACATGTGAAGAAGAGGTGAAGGGTAAGGTTGATTTGGATATAGAACAAAATGAAAATAATAATTGTAATAAGGGGAAAAGGAAAATATCTTTGCAGCTAGACTATGATGCAATAATCATTGCATGGGATAGCCAAAAGTGTCCATGGACTAATGGTGACAAACCAAATTTTGATGCTGATGAGTCCTGGCTTGATTGCATGGGAACTTATGGAACAGAGGTTCATAATCCATATGGTGAATTTGGTGGATATGGATATCATCCAGTAATGGTAGATGGAGGTAGAGAGGCAAGAGTTTCGAGGTATAGAGAAAAGAGAAGAACAAGGTTGTTTTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGAAGATTTGTAAAGAGGGCTTCCTTTGCAGTTCCAACATTTCCTTTGCTAAAATAA 1308 0.3953 MSCSSKKAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASYKSTGDDEFNNSGPFSGFTKKARTPRQGKHKSSPSNEPARNNNNPFHLVPEIGFDEVNSLSHDENEEQLLYRVPIFDPFVAELCSTSPPSVGSSEGGPGTITIASATFTPDAENIRSENRGGSNNYEMESFHGLLPSDIELAEFAADVDSLLGRGLENQCIGMEELGLIDTKHEKEGECIGKVKEEGEENHEEVVEVDNIEMMGKESSFELNFDYDESHETCEEEVKGKVDLDIEQNENNNCNKGKRKISLQLDYDAIIIAWDSQKCPWTNGDKPNFDADESWLDCMGTYGTEVHNPYGEFGGYGYHPVMVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06017 435 SMART bboxneu5 15 62 IPR000315 GO:0008270
Trre1g06017 435 MobiDBLite consensus disorder prediction 69 84 - -
Trre1g06017 435 CDD Bbox1_BBX-like 19 62 - -
Trre1g06017 435 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 424 - -
Trre1g06017 435 MobiDBLite consensus disorder prediction 95 109 - -
Trre1g06017 435 Pfam CCT motif 381 423 IPR010402 GO:0005515
Trre1g06017 435 MobiDBLite consensus disorder prediction 69 114 - -
Trre1g06017 435 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Trre1g06017 435 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Trre1g06017 435 ProSiteProfiles CCT domain profile. 381 423 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06017 Trre-Chr1 64442263 64443721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06017 6 423 C2C2-CO-like Transcription Factor Family AT1G25440 45.183 2.55e-100 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre1g06017 zf-B_box 9.7e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06017 1 64442263 64443721 Trre1g06017 1 64442263 64443721 ECH