Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06005 ATGGGAAAAAAAGAAAGGGTTGTTTATCTCATATCATTTTTATTTTCTCACTTCTTCCTGTCTCTCTCTGTCGGTACCATCATGAGACCACAAGGAAATCCATTAGATCTTAACAATTTGCCTGATGAATACTCTAGAGATCATGGTAAACAAGTTCTTGAAGACACTGATCCACCCGCAGGTTGCATCAGGAAAAAGAAAAACGGCGGGAAGGATGGAAAAGAAGAGTGTGGGAAGGTGTATGAATGTAGATTTTGTTCCCTCAAGTTCTGTAAATCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACTGAGACGCTTAACCATGCTCGTCAGCTAGTCTTCCGTAACGATCATACCCAGCTTGCACCACAACCACCTCCCTCTCACCTTGTAGGATGTTGTCCACCACCACCAATTGCAACAGGAGGTTACGTTCAAGCAAATAACATGGGAGATCCAACAATGCCTCTAAGATTCCCAAGATATTTCTCAGGCTCATCTTCCTCAAATCATATTCCTCCTCCACCGCCGCCGCCACCACAACAAACTCAGCCATATCTGTACACTTCACCTTCACGACCGGTGTCTTTTCCGACACATTTAATTCCTCAGCATCCGATGAACGAGTACCATGTCGGTCATGTGATGAGTAGCAACCACCACCAACAATATGGAGGACTCCAACACATGAACTATGTTGGTGGAGGTGGTGGTGAGTCAAATTACACATGCATAGGTGCACCGGTTGGACAAGGTTTTGTTCCGGGAAGTGGTGGCGCCGAGAAAGGTCAAAATCATCATCATCAACAACAACATCAGGATCAAGATGGAACTTTGAATTGGGGAAGGAGTACCACCTACTCAGGAACACAGCATCGTTTGGATAATCATAATTCAGCGATCAATCGGTTTCAAGATGGCTTCTAA 945 0.4529 MGKKERVVYLISFLFSHFFLSLSVGTIMRPQGNPLDLNNLPDEYSRDHGKQVLEDTDPPAGCIRKKKNGGKDGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHTQLAPQPPPSHLVGCCPPPPIATGGYVQANNMGDPTMPLRFPRYFSGSSSSNHIPPPPPPPPQQTQPYLYTSPSRPVSFPTHLIPQHPMNEYHVGHVMSSNHHQQYGGLQHMNYVGGGGGESNYTCIGAPVGQGFVPGSGGAEKGQNHHHQQQHQDQDGTLNWGRSTTYSGTQHRLDNHNSAINRFQDGF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06005 314 Gene3D Classic Zinc Finger 64 129 - -
Trre1g06005 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Trre1g06005 314 MobiDBLite consensus disorder prediction 166 191 - -
Trre1g06005 314 MobiDBLite consensus disorder prediction 262 299 - -
Trre1g06005 314 SUPERFAMILY beta-beta-alpha zinc fingers 79 109 IPR036236 -
Trre1g06005 314 MobiDBLite consensus disorder prediction 176 191 - -
Trre1g06005 314 MobiDBLite consensus disorder prediction 280 299 - -
Trre1g06005 314 FunFam Zinc finger protein STAMENLESS 1 59 128 - -
Trre1g06005 314 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Trre1g06005 314 PANTHER ZINC FINGER PROTEIN JAGGED 59 301 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06005 Trre-Chr1 64343416 64347077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06005 31 258 C2H2 Transcription Factor Family AT1G13400 42.979 2.31e-30 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06005 1 64343416 64347077 Trre1g06005 1 64343416 64347077 ECH