Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06001 ATGCCTACAACAACAAAAACAACACCTTCATATCTCTCACACTACCCTCAACGTTATTATCACCACAAACCCATTAAATATCGCAACTTTTCACACACACATTTCTCCACCGCCGCAACACGGCGGCACCACTTCCCACGCATGGAAATCTCCTCCTTACACCGCCGTTGGAAAGACAAAGTTATAGTCATAATGGGCGCAACCGGCTCCGGCAAATCACGTCTTTCCGTTGAAATCGCAACCCGTTTCCCTTACTCCGAAATAATCAACTCCGATAAAATCCAAGTTTACAAAGGACTTGATATAACCACCAACAAGATCCCCTTTCATCAACGCAACAACGTTCCTCATCATCTTCTCGGCGACGTTGACTCTTCTCACGGCGAGTTCTCACCTTCAGATTTCCGTCGCTACGCTGGAGATATTATCTCAGATATAACTTCACGGAGAAAGCTTCCCATTATCGTTGGTGGGTCTAACTCATTCATTCACGCTCTTCTTGTAGAACGATTTGACTCAGAGTTGAACGTGTTTGAAGACGAATCATCATCATCGGAGATATCATCGGATTTAAGGTACAAATGTTGCTTTATTTGGATGGATATATCGTTTCCTGTGTTATCGGAATATTTACTGAAACGAGTCGACGATATGTTTGACTCGGGAATGGTGGACGAGTTAGCCGAGTTTTATGAACCGGATGCGGATAACCGAACCGGGTTAAGAAAAGCAATCGGTGTACCCGAGTTCGACCGGTTTTTTAAACAGTATCCACCGGTTGAAAAAGAAGGTAGTAATTCAATGCGGGAACGTGCATACGAGGAAGCAGTGAAGGCGATTAAAGATAACACGTGTCAGCTAGCTAAGAGACAGATAGGGAAGATCTTACGGTTAAAACGAGCTGGATGGGACCTACAAAGAATTGATGCCACGGAGGCGTTTAGGGCGGTGCTGACGTCAGAGTCTAACGGCGGAGGAGATGGATTTTCCGATGTATGGAAAAAGCAAGTGTTGGAACCAAGCATGAAGATTGTGAATCGTTTCTTGATGGAGTAG 1056 0.4479 MPTTTKTTPSYLSHYPQRYYHHKPIKYRNFSHTHFSTAATRRHHFPRMEISSLHRRWKDKVIVIMGATGSGKSRLSVEIATRFPYSEIINSDKIQVYKGLDITTNKIPFHQRNNVPHHLLGDVDSSHGEFSPSDFRRYAGDIISDITSRRKLPIIVGGSNSFIHALLVERFDSELNVFEDESSSSEISSDLRYKCCFIWMDISFPVLSEYLLKRVDDMFDSGMVDELAEFYEPDADNRTGLRKAIGVPEFDRFFKQYPPVEKEGSNSMRERAYEEAVKAIKDNTCQLAKRQIGKILRLKRAGWDLQRIDATEAFRAVLTSESNGGGDGFSDVWKKQVLEPSMKIVNRFLME 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06001 351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 237 IPR027417 -
Trre1g06001 351 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 58 349 IPR039657 -
Trre1g06001 351 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 204 305 - -
Trre1g06001 351 Gene3D - 58 349 IPR027417 -
Trre1g06001 351 Pfam IPP transferase 186 292 - -
Trre1g06001 351 Pfam IPP transferase 95 174 - -
Trre1g06001 351 FunFam Adenylate isopentenyltransferase 204 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06001 Trre-Chr1 64298048 64299103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06001 192 349 C2H2 Transcription Factor Family AT2G27760 34.066 2.09e-17 81.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06001 1 64298048 64299103 Trre1g06001 1 64298048 64299103 ECH