Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05994 ATGCCTACAAAAGATGATAACTCGGAGGAGAAGGAGAAGTGTCTCGATCTCTTTCTAAAGATCGGTTTAGATGAACGCACTGCTCGTAACACCATCGCCAATAACAAAGTCACCACCAATCTCACTTCCGTTATCCACGAGGCTGGTGTTACTGATGGTTGCATCAGAACTGTTGGAAACCTAATTTATACGGTTGCAACTAAGTATCCTGGAAATGCGTTGCTGCATCGCCCTACATTGCTTGAATACGTTGTTTCGTCAAAGGTGAAAACAACAGCGCAATTAGATGCAGCGCTTTCATTTCTTGCTACCACGGGTTCGGAGAACCTTGATTTGAATAAATTTGAAGAAGCATGTGGTGTTGGTGTTGAGGTTTCAGACGAAGATATCAGTCGTGCTGTTAACGAGGTTTTTGAAGAGAATAAAGCTTCAATTCTGGAACTACGCTATCGAACAAATGTTGGTGAGTTACTTGGGCATGTGCGAAAGAGGCTCCCATGGGCTGATGCAAAAGCTGTCAAGCAACGTGCTGATGAAAAATTATATGAGCTACTGGGTGATAAAACAGCAGCAGACAATGAAAAGCCTTCTAAAAAGAAGAAAGAGAAACCTGCTAAAGTAGAGGATAAGGCAGCGCCTATTGCTACTCCTGAAAAGCCACCCGAAGAAGATCTCAATCCATTTTTGATATTCCCTAATCCAGAGGAAAATCTAAAGGTGCATACTGAAGTTCCTTTTAGTGACGGTACTATCCTGAGATGTTGCAATACAAAGGCGCTTCTTGACAAGCACTTGAAAGCAACAGGTGGGAAAGTTTTGACCCGGTTTCCTCCTGAGCCAAATGGATATTTGCATATTGGTCATGCCAAGGCAATGTTTATTGATTTTGGGTTGGCAAAAGACAGAGACGGAGGTTGCTACCTGAGGTATGATGATACAAATCCTGAAGCAGAAAAGAAAGAGTATATTGATCACATTGAAGAAATTGTCCAGTGGATGGGCTGGAAACCATTCAAGATTACTTACACAAGTGATTATTTTCAAGAACTGTATGAATTAGCTGTGGAGCTCATAACAAGGGGCTGTGCATATGTTGATCATCAGACACCTGATGAGATAAAGGAGTATAGGGAGAAGAAATTGAACAGTCCTTGGAGAGACAGACCAATTTCAGAATCATTAAAACTTTTTGAGGATATGAGATGCGGTCTTATAGAAGAAGGAAAAGCGACACTTCGAATGAAGCAAGATATGCAGAGTGATAATTACAATATGTATGACCTTATTGCATATCGAATTAAGTTTACTCCACATCCTCATGCTGGAGACAAATGGTGCATTTACCCAAGTTATGATTATGCTCACTGCATTGTGGATTCACTTGAGAATGTCACACATTCACTGTGTACTCTTGAGTTTGAGACACGCCGTGCTTCATACTATTGGTTGTTACACGCACTTGGTATTTACCAACCTTATGTATGGGAGTATTCAAGGCTGAATATCTCTAACACAGTAATGTCGAAGCGCAAGCTTAATCGTCTGGTGACTGAAAAATGGGTTGATGGGTGGGATGATCCTCGACTGATGACATTAGCTGGTTTGCGGCGTAGAGGCATGACTTCAACAGCAATCAATTCTTTTGTTCGAGGAATTGGAATCACTAGAAGTGATGGCACTTTGATATCTGTGAGTCGCCTTGAATATCATGTTAGGGAAGAATTGAACAAAACAGCCCCACGGACAATGGTTGTCCTGCACCCACTCAAGGTTGTTATTACTAATCTTGAAGCCAACTCAACAATTGAGGTTGACGGGAAAAAATGGCCTGATGCTCAAGCTGATGATCCATCTGCTTTCTACAAGATTCCGTTTTCCAATGTTGTATATATTGAACGTACGGATTTCCGTATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGTAAATCTGCGATACTCAGATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCCGATGATAATGAGACTATTCTTGAAATTCGGGCCGAGTATGATCCTTCAAAGAAGACAAAGCCCAAGGGTGTTCTACACTGGGTTGCACAACCTTCTCATGAAGTTGATCCTTTGAAGGTCGAAGTCAGACTGTTTGAGAGGCTGTTCCTATCAGAGAATCCTGCTGAACTTGACAATTGGCTTGGCGATCTGAACCCTCATTCCAAAGAGGTAATTCCAAATGCATTTGGTTTGTCCTCACTCCGGGATGCAAAAGTTGGTGATAGTTTCCAGTTTGAGAGATTAGGCTATTTTGTGGTCGACCAGGACTCTACTCCAGAAAAGCTTGTTTTTAATAGAACAGTCACATTGAAGGACAGTTACAGTAAGGGTGGAAAATAG 2388 0.4154 MPTKDDNSEEKEKCLDLFLKIGLDERTARNTIANNKVTTNLTSVIHEAGVTDGCIRTVGNLIYTVATKYPGNALLHRPTLLEYVVSSKVKTTAQLDAALSFLATTGSENLDLNKFEEACGVGVEVSDEDISRAVNEVFEENKASILELRYRTNVGELLGHVRKRLPWADAKAVKQRADEKLYELLGDKTAADNEKPSKKKKEKPAKVEDKAAPIATPEKPPEEDLNPFLIFPNPEENLKVHTEVPFSDGTILRCCNTKALLDKHLKATGGKVLTRFPPEPNGYLHIGHAKAMFIDFGLAKDRDGGCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWKPFKITYTSDYFQELYELAVELITRGCAYVDHQTPDEIKEYREKKLNSPWRDRPISESLKLFEDMRCGLIEEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENVTHSLCTLEFETRRASYYWLLHALGIYQPYVWEYSRLNISNTVMSKRKLNRLVTEKWVDGWDDPRLMTLAGLRRRGMTSTAINSFVRGIGITRSDGTLISVSRLEYHVREELNKTAPRTMVVLHPLKVVITNLEANSTIEVDGKKWPDAQADDPSAFYKIPFSNVVYIERTDFRMQDSKDYYGLAPGKSAILRYAFPIKCTEVILADDNETILEIRAEYDPSKKTKPKGVLHWVAQPSHEVDPLKVEVRLFERLFLSENPAELDNWLGDLNPHSKEVIPNAFGLSSLRDAKVGDSFQFERLGYFVVDQDSTPEKLVFNRTVTLKDSYSKGGK 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05994 795 Gene3D Ribosomal Protein L25; Chain P 703 788 IPR020056 -
Trre1g05994 795 SUPERFAMILY Nucleotidylyl transferase 271 585 - -
Trre1g05994 795 MobiDBLite consensus disorder prediction 192 217 - -
Trre1g05994 795 NCBIfam glutamine--tRNA ligase 272 792 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Trre1g05994 795 MobiDBLite consensus disorder prediction 192 225 - -
Trre1g05994 795 SUPERFAMILY Ribosomal protein L25-like 579 789 IPR011035 GO:0006412
Trre1g05994 795 Gene3D - 8 123 IPR042558 -
Trre1g05994 795 CDD GlnRS_core 271 581 - -
Trre1g05994 795 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 13 170 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Trre1g05994 795 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 278 289 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Trre1g05994 795 FunFam Glutamine--tRNA ligase cytoplasmic 10 123 - -
Trre1g05994 795 Gene3D Ribosomal Protein L25; Chain P 583 702 IPR020056 -
Trre1g05994 795 FunFam Glutamine--tRNA ligase cytoplasmic 241 582 - -
Trre1g05994 795 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 173 244 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Trre1g05994 795 PANTHER GLUTAMINE-TRNA LIGASE 20 789 - -
Trre1g05994 795 FunFam Glutamine--tRNA ligase cytoplasmic 703 788 - -
Trre1g05994 795 FunFam Glutamine--tRNA ligase cytoplasmic 125 193 - -
Trre1g05994 795 Gene3D - 124 193 IPR042559 -
Trre1g05994 795 Pfam tRNA synthetases class I (E and Q), catalytic domain 271 576 IPR020058 GO:0004812|GO:0005524|GO:0043039
Trre1g05994 795 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 579 770 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Trre1g05994 795 Gene3D HUPs 247 582 IPR014729 -
Trre1g05994 795 PRINTS Glutamyl-tRNA synthetase signature 275 287 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Trre1g05994 795 PRINTS Glutamyl-tRNA synthetase signature 304 317 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Trre1g05994 795 PRINTS Glutamyl-tRNA synthetase signature 449 459 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Trre1g05994 795 FunFam Glutamine--tRNA ligase 583 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05994 Trre-Chr1 64222767 64231094 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05994 1 64222767 64231094 Trre1g05994 1 64222767 64231094 ECH