Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05988 ATGGATATCAACCACCATGAACACTACAATAATAAAAGAACAAACACAACTTCCCAAACACGCCTTAAACTATTTGGCTTCAACGTTCAAGAAGATGAAACCATGCATGATAATAATATTCATGACTACTCAACAACAACCAAACCAACTTCTTCTTCAACTTCAACTTCTCCATCAAGATCACCAGACTCTTCCGCCATCAGTGAAACTTTCCCACCTTCCTCCGGTGAAAGAAAATACGAGTGTCAATACTGTTGTAGAGAATTTGCAAATTCACAAGCACTTGGTGGACACCAAAACGCACACAAAAAAGAACGTCAACAACTCAAACGTGCTCAGTTACAAGCTAATCGAAGCGCTGCCGTTTCGTTCGTTCGAAATCCTATCATCTCCGCCTTTGCTCCTCCGCCGCATCTCTTAGCTCCGCCGGGGTCCATGATGGTTCCATCTTCAAATTCCTCGTGGGTTTACGTTCCACCACGATCTGCTCCTCCTCCGTTCCACGTGTCAGTATCACACGGTTGCGTTTTCCCGTCGGCGAACGGAAACACAAACACCATGATGAGTGGTGGTAACAATAATAATTGTAATAATAATGGTGTTAGAGGTGTGAAATCTGCGGGTGCAGGGATGTTTTCGTGTGTTGGCGTTGTAGGTGATTCATCATCCGCATTGTCAACGATGCAGGTACAAGCCCGGGCCCACCATGTAAGGATTGATGGGCCATGTTTGAGTAGGTTCTCAAAAAGTGATAGCGGGCCCAATTTTGATGATGCATTGGGCTTGGATTTACATCTTAGTCTTGCGCCGGCTGCAAATCAATCATACGGCTCGGCTCAGCTTGGTTATTCTAAATATTCCTCTTAG 867 0.4487 MDINHHEHYNNKRTNTTSQTRLKLFGFNVQEDETMHDNNIHDYSTTTKPTSSSTSTSPSRSPDSSAISETFPPSSGERKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQANRSAAVSFVRNPIISAFAPPPHLLAPPGSMMVPSSNSSWVYVPPRSAPPPFHVSVSHGCVFPSANGNTNTMMSGGNNNNCNNNGVRGVKSAGAGMFSCVGVVGDSSSALSTMQVQARAHHVRIDGPCLSRFSKSDSGPNFDDALGLDLHLSLAPAANQSYGSAQLGYSKYSS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05988 288 Gene3D Classic Zinc Finger 56 127 - -
Trre1g05988 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Trre1g05988 288 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Trre1g05988 288 FunFam Zinc finger protein 6 69 130 - -
Trre1g05988 288 MobiDBLite consensus disorder prediction 40 72 - -
Trre1g05988 288 PANTHER ZINC FINGER PROTEIN 5 11 272 IPR044299 GO:0010090
Trre1g05988 288 SUPERFAMILY beta-beta-alpha zinc fingers 76 107 IPR036236 -
Trre1g05988 288 MobiDBLite consensus disorder prediction 33 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05988 Trre-Chr1 64155494 64156360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05988 14 273 C2H2 Transcription Factor Family AT1G68360 43.431 7.59e-54 173
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g05988 1 64155494 64156360 Trre1g05988 1 64155494 64156360 ECH